protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation Class Reference

#include <PreventResiduesFromRepackingOperation.hh>

Inheritance diagram for protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation:

Collaboration diagram for protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation:

Public Types
typedef RestrictOperationsBase	parent
Public Types inherited from protocols::toolbox::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr
typedef pose::Pose	Pose

Public Member Functions
	PreventResiduesFromRepackingOperation ()
	PreventResiduesFromRepackingOperation (utility::vector1< core::Size > residues)
utility::vector1< core::Size >	get_residues () const
void	set_residues (utility::vector1< core::Size > residues_vec)
virtual	~PreventResiduesFromRepackingOperation ()
virtual TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...
virtual void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to load parameters and properties. More...
Public Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
virtual	~RestrictOperationsBase ()
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
std::string	unparsed_residues_
utility::vector1< core::Size >	residues_

Additional Inherited Members
Protected Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Definition at line 39 of file PreventResiduesFromRepackingOperation.hh.

Member Typedef Documentation

typedef RestrictOperationsBase protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::parent

Definition at line 42 of file PreventResiduesFromRepackingOperation.hh.

Constructor & Destructor Documentation

protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::PreventResiduesFromRepackingOperation

(

)

Definition at line 57 of file PreventResiduesFromRepackingOperation.cc.

Referenced by clone().

protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::PreventResiduesFromRepackingOperation

(

utility::vector1< core::Size >

residues)

Definition at line 59 of file PreventResiduesFromRepackingOperation.cc.

protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::~PreventResiduesFromRepackingOperation ( )

virtual

Definition at line 64 of file PreventResiduesFromRepackingOperation.cc.

Member Function Documentation

void protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

Definition at line 78 of file PreventResiduesFromRepackingOperation.cc.

References core::pack::task::operation::PreventRepacking::include_residue(), and residues_.

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

Definition at line 72 of file PreventResiduesFromRepackingOperation.cc.

References PreventResiduesFromRepackingOperation().

utility::vector1< core::Size > protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::get_residues

(

)

const

Definition at line 91 of file PreventResiduesFromRepackingOperation.cc.

References residues_.

void protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::parse_tag ( TagPtr  tag)

virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 107 of file PreventResiduesFromRepackingOperation.cc.

References residues_, protocols::TR(), and unparsed_residues_.

void protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::set_residues

(

utility::vector1< core::Size >

residues_vec)

Definition at line 97 of file PreventResiduesFromRepackingOperation.cc.

References residues_.

Referenced by protocols::seeded_abinitio::SeedSetupMover::set_packerTasks_target_and_seeds().

Member Data Documentation

utility::vector1<core::Size> protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::residues_

private

Definition at line 64 of file PreventResiduesFromRepackingOperation.hh.

Referenced by apply(), get_residues(), parse_tag(), and set_residues().

std::string protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::unparsed_residues_

private

Definition at line 63 of file PreventResiduesFromRepackingOperation.hh.

Referenced by parse_tag().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/task_operations/PreventResiduesFromRepackingOperation.hh
• src/protocols/toolbox/task_operations/PreventResiduesFromRepackingOperation.cc