PDBJobInputter.hh

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/// @file   protocols/jd2/PDBJobInputter.hh
/// @brief  header file for PDBJobInputter class, part of August 2008 job distributor as planned at RosettaCon08
/// @author Steven Lewis smlewi@gmail.com


#ifndef INCLUDED_protocols_jd2_PDBJobInputter_hh
#define INCLUDED_protocols_jd2_PDBJobInputter_hh

//unit headers
#include <protocols/jd2/JobInputter.hh>
#include <protocols/jd2/PDBJobInputter.fwd.hh>
#include <protocols/jd2/Job.fwd.hh>

//project headers
#include <core/pose/Pose.fwd.hh>

#include <utility/vector1.hh>

//utility headers

namespace protocols {
namespace jd2 {

///@details This is the simplest implementation of JobInputter, which reads from -s/-l and PDB files.
class PDBJobInputter : public protocols::jd2::JobInputter
{
public:

  PDBJobInputter();

  virtual ~PDBJobInputter();

  ///@brief this function is responsible for filling the pose reference with the pose indicated by the job.  The Job object (within its InnerJob) contains a PoseCOP.  This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference.  This implementation uses pose_from_pdb
  virtual void pose_from_job( core::pose::Pose & pose, JobOP job );

  ///@brief this function determines what jobs exist from -s/-l
  virtual void fill_jobs( Jobs & jobs );

  /// @brief Return the type of input source that the PDBJobInputter is currently
  ///  using.
  /// @return Always <em>PDB_FILE</em>.
  virtual JobInputterInputSource::Enum input_source() const;

}; // PDBJobInputter

} // namespace jd2
} // namespace protocols

#endif //INCLUDED_protocols_jd2_PDBJobInputter_HH