Rosetta 3.5: protocols::rotamer_recovery::RRReporterHuman Class Reference

The reporting functionality for the rotamer recovery test in a human readable format. More...

#include <RRReporterHuman.hh>

Inheritance diagram for protocols::rotamer_recovery::RRReporterHuman:

Inheritance graph

Collaboration diagram for protocols::rotamer_recovery::RRReporterHuman:

Collaboration graph

Public Member Functions
	RRReporterHuman ()

	RRReporterHuman (RRReporterHuman const &src)

	~RRReporterHuman ()

void	set_comparer_info (std::string const &comparer_name, std::string const &comparer_params)

void	set_protocol_info (std::string const &protocol_name, std::string const &protocol_params)

virtual void	reset_recovery ()

virtual void	report_rotamer_recovery (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Real score, bool recovered)

virtual core::Real	recovery_rate () const

virtual void	show (std::ostream &out) const

virtual void	show () const

Public Member Functions inherited from protocols::rotamer_recovery::RRReporter
virtual	~RRReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Private Member Functions
void	write_header (std::ostream &out) const

Private Attributes
std::string	protocol_name_

std::string	protocol_params_

std::string	comparer_name_

std::string	comparer_params_

core::Size	column_width_

core::Size	precision_

std::map< std::string, PerNativeRRReporterHuman >	per_native_recovery_

core::Real	residues_considered_

core::Size	rotamers_recovered_

core::Real	recovery_score_mean_

core::Real	recovery_score_m2_

Detailed Description

The reporting functionality for the rotamer recovery test in a human readable format.

Definition at line 131 of file RRReporterHuman.hh.

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRReporterHuman::RRReporterHuman ( )

Definition at line 247 of file RRReporterHuman.cc.

protocols::rotamer_recovery::RRReporterHuman::RRReporterHuman ( RRReporterHuman const & src)

Definition at line 261 of file RRReporterHuman.cc.

protocols::rotamer_recovery::RRReporterHuman::~RRReporterHuman ( )

Definition at line 276 of file RRReporterHuman.cc.

Member Function Documentation

Real protocols::rotamer_recovery::RRReporterHuman::recovery_rate ( ) const

virtual

Implements protocols::rotamer_recovery::RRReporter.

Definition at line 392 of file RRReporterHuman.cc.

References residues_considered_, and rotamers_recovered_.

Referenced by show(), and write_header().

void protocols::rotamer_recovery::RRReporterHuman::report_rotamer_recovery	(	core::pose::Pose const &	pose1,
		core::pose::Pose const &	pose2,
		core::conformation::Residue const &	res1,
		core::conformation::Residue const &	res2,
		core::Real	score,
		bool	recovered
	)

virtual

Implements protocols::rotamer_recovery::RRReporter.

Definition at line 307 of file RRReporterHuman.cc.

References protocols::rotamer_recovery::PerNativeRRReporterHuman::initialized(), per_native_recovery_, recovery_score_m2_, recovery_score_mean_, protocols::rotamer_recovery::PerNativeRRReporterHuman::report_rotamer_recovery(), residues_considered_, rotamers_recovered_, protocols::rotamer_recovery::PerNativeRRReporterHuman::set_native(), and core::pose::tag_from_pose().

void protocols::rotamer_recovery::RRReporterHuman::reset_recovery ( )

virtual

Implements protocols::rotamer_recovery::RRReporter.

Definition at line 297 of file RRReporterHuman.cc.

References per_native_recovery_, recovery_score_m2_, recovery_score_mean_, residues_considered_, and rotamers_recovered_.

void protocols::rotamer_recovery::RRReporterHuman::set_comparer_info	(	std::string const &	comparer_name,
		std::string const &	comparer_params
	)

virtual

Implements protocols::rotamer_recovery::RRReporter.

Definition at line 288 of file RRReporterHuman.cc.

References comparer_name_, and comparer_params_.

void protocols::rotamer_recovery::RRReporterHuman::set_protocol_info	(	std::string const &	protocol_name,
		std::string const &	protocol_params
	)

virtual

Implements protocols::rotamer_recovery::RRReporter.

Definition at line 279 of file RRReporterHuman.cc.

References protocol_name_, and protocol_params_.

void protocols::rotamer_recovery::RRReporterHuman::show ( std::ostream & out) const

virtual

Implements protocols::rotamer_recovery::RRReporter.

Definition at line 368 of file RRReporterHuman.cc.

References per_native_recovery_, and write_header().

void protocols::rotamer_recovery::RRReporterHuman::show ( ) const

virtual

Implements protocols::rotamer_recovery::RRReporter.

Definition at line 385 of file RRReporterHuman.cc.

References recovery_rate(), residues_considered_, rotamers_recovered_, and protocols::rotamer_recovery::TR().

void protocols::rotamer_recovery::RRReporterHuman::write_header ( std::ostream & out) const

private

Definition at line 334 of file RRReporterHuman.cc.

References protocols::comparative_modeling::features::A, column_width_, comparer_name_, comparer_params_, per_native_recovery_, protocol_name_, protocol_params_, recovery_rate(), recovery_score_m2_, recovery_score_mean_, residues_considered_, and rotamers_recovered_.

Referenced by show().

Member Data Documentation

core::Size protocols::rotamer_recovery::RRReporterHuman::column_width_

private

Definition at line 194 of file RRReporterHuman.hh.

Referenced by write_header().

std::string protocols::rotamer_recovery::RRReporterHuman::comparer_name_

private

Definition at line 192 of file RRReporterHuman.hh.

Referenced by set_comparer_info(), and write_header().

std::string protocols::rotamer_recovery::RRReporterHuman::comparer_params_

private

Definition at line 193 of file RRReporterHuman.hh.

Referenced by set_comparer_info(), and write_header().

std::map< std::string, PerNativeRRReporterHuman > protocols::rotamer_recovery::RRReporterHuman::per_native_recovery_

private

Definition at line 196 of file RRReporterHuman.hh.

Referenced by report_rotamer_recovery(), reset_recovery(), show(), and write_header().

core::Size protocols::rotamer_recovery::RRReporterHuman::precision_

private

Definition at line 195 of file RRReporterHuman.hh.

std::string protocols::rotamer_recovery::RRReporterHuman::protocol_name_

private

Definition at line 190 of file RRReporterHuman.hh.

Referenced by set_protocol_info(), and write_header().

std::string protocols::rotamer_recovery::RRReporterHuman::protocol_params_

private

Definition at line 191 of file RRReporterHuman.hh.

Referenced by set_protocol_info(), and write_header().

core::Real protocols::rotamer_recovery::RRReporterHuman::recovery_score_m2_

private

Definition at line 200 of file RRReporterHuman.hh.

Referenced by report_rotamer_recovery(), reset_recovery(), and write_header().

core::Real protocols::rotamer_recovery::RRReporterHuman::recovery_score_mean_

private

Definition at line 199 of file RRReporterHuman.hh.

Referenced by report_rotamer_recovery(), reset_recovery(), and write_header().

core::Real protocols::rotamer_recovery::RRReporterHuman::residues_considered_

private

Definition at line 197 of file RRReporterHuman.hh.

Referenced by recovery_rate(), report_rotamer_recovery(), reset_recovery(), show(), and write_header().

core::Size protocols::rotamer_recovery::RRReporterHuman::rotamers_recovered_

private

Definition at line 198 of file RRReporterHuman.hh.

Referenced by recovery_rate(), report_rotamer_recovery(), reset_recovery(), show(), and write_header().

The documentation for this class was generated from the following files:

src/protocols/rotamer_recovery/RRReporterHuman.hh
src/protocols/rotamer_recovery/RRReporterHuman.cc