util.cc File Reference

Utility functions for grafting. More...

#include <protocols/grafting/util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/util.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/VariantType.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>

Go to the source code of this file.

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::grafting

Constant Groups
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::grafting

Functions
static basic::Tracer	TR ("protocols.grafting")
void	protocols::grafting::delete_region (Pose &pose, Size const start, Size const end)
	Deletes a region of the pose. Starting from and including 'start' and 'end' residue. More...
Pose	protocols::grafting::return_region (Pose &pose, Size const start, Size const end)
	Returns a region of the pose including start and end as a new pose. Has a simple foldtree. More...
Pose	protocols::grafting::replace_region (Pose const &from_pose, Pose const &to_pose, Size const from_pose_start_residue, Size const to_pose_start_residue, Size const insertion_length)
	replaces residues from from_pose to to_pose into pose where insertion region is defined. Returns product as a new value. More...
Pose	protocols::grafting::insert_pose_into_pose (Pose const &scaffold_pose, Pose const &insert_pose, Size const insert_point, Size const insert_point_end)
	inserts one pose into another pose, returning the product as a new value. More...

Detailed Description

Utility functions for grafting.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Steven Lewis (smlew.nosp@m.i@gm.nosp@m.ail.c.nosp@m.om)

Definition in file util.cc.

Function Documentation

static basic::Tracer TR ( "protocols.grafting"  )

static