protocols::jumping::PairingTemplate Class Reference

#include <PairingLibrary.hh>

Collaboration diagram for protocols::jumping::PairingTemplate:

Public Member Functions
	PairingTemplate (std::string const &c, std::string const &s1, std::string const &s2, std::string const &s3)
	PairingTemplate (std::string const &s1, std::string const &s2, std::string const &s3)

Public Attributes
core::kinematics::RT	rt_
ObjexxFCL::FArray1D_float	phi
ObjexxFCL::FArray1D_float	psi
ObjexxFCL::FArray1D_float	omega
ObjexxFCL::FArray1D_char	secstruct
AtomList	atoms_downstream_
AtomList	atoms_upstream_

Private Types
typedef utility::vector1 < std::string >	AtomList

Detailed Description

Definition at line 60 of file PairingLibrary.hh.

Member Typedef Documentation

typedef utility::vector1<std::string> protocols::jumping::PairingTemplate::AtomList

private

Definition at line 61 of file PairingLibrary.hh.

Constructor & Destructor Documentation

protocols::jumping::PairingTemplate::PairingTemplate	(	std::string const &	c,
		std::string const &	s1,
		std::string const &	s2,
		std::string const &	s3
	)

Definition at line 302 of file PairingLibrary.cc.

References atoms_downstream_, and atoms_upstream_.

protocols::jumping::PairingTemplate::PairingTemplate	(	std::string const &	s1,
		std::string const &	s2,
		std::string const &	s3
	)

Definition at line 289 of file PairingLibrary.cc.

References atoms_downstream_, and atoms_upstream_.

Member Data Documentation

AtomList protocols::jumping::PairingTemplate::atoms_downstream_

Definition at line 72 of file PairingLibrary.hh.

Referenced by PairingTemplate().

AtomList protocols::jumping::PairingTemplate::atoms_upstream_

Definition at line 73 of file PairingLibrary.hh.

Referenced by PairingTemplate().

ObjexxFCL::FArray1D_float protocols::jumping::PairingTemplate::omega

Definition at line 70 of file PairingLibrary.hh.

Referenced by protocols::jumping::PairingLibrary::read_from_file(), protocols::jumping::PairingLibrary::read_from_file_no_filters(), and protocols::jumping::PairingLibrary::set_tmh_jump().

ObjexxFCL::FArray1D_float protocols::jumping::PairingTemplate::phi

Definition at line 68 of file PairingLibrary.hh.

Referenced by protocols::jumping::PairingLibrary::read_from_file(), protocols::jumping::PairingLibrary::read_from_file_no_filters(), and protocols::jumping::PairingLibrary::set_tmh_jump().

ObjexxFCL::FArray1D_float protocols::jumping::PairingTemplate::psi

Definition at line 69 of file PairingLibrary.hh.

Referenced by protocols::jumping::PairingLibrary::read_from_file(), protocols::jumping::PairingLibrary::read_from_file_no_filters(), and protocols::jumping::PairingLibrary::set_tmh_jump().

core::kinematics::RT protocols::jumping::PairingTemplate::rt_

Definition at line 67 of file PairingLibrary.hh.

Referenced by protocols::jumping::PairingLibrary::get_random_beta_sheet_jump(), protocols::jumping::PairingLibrary::get_random_tmh_jump(), protocols::jumping::PairingLibrary::read_from_file(), protocols::jumping::PairingLibrary::read_from_file_no_filters(), and protocols::jumping::PairingLibrary::set_tmh_jump().

ObjexxFCL::FArray1D_char protocols::jumping::PairingTemplate::secstruct

Definition at line 71 of file PairingLibrary.hh.

Referenced by protocols::jumping::PairingLibrary::read_from_file_no_filters(), and protocols::jumping::PairingLibrary::set_tmh_jump().

---

The documentation for this class was generated from the following files:

• src/protocols/jumping/PairingLibrary.hh
• src/protocols/jumping/PairingLibrary.cc