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protocols::antibody2::Ab_TemplateInfo Class Reference

antibody2 definition More...

#include <Ab_TemplateInfo.hh>

Inheritance diagram for protocols::antibody2::Ab_TemplateInfo:
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Public Types

typedef std::map< std::string,
core::pose::Pose > 		TemplatePoseMap
 

Public Member Functions

 Ab_TemplateInfo ()
 constructors More...
 
 Ab_TemplateInfo (bool load_L1, bool load_L2, bool load_L3, bool load_H1, bool load_H2, bool load_H3)
 constructor with arguments 1 More...
 
 Ab_TemplateInfo (bool load_L1, bool load_L2, bool load_L3, bool load_H1, bool load_H2, bool load_H3, bool camelid)
 constructor with arguments 1 More...
 
void load_templates_from_pdbs (bool load_L1, bool load_L2, bool load_L3, bool load_H1, bool load_H2, bool load_H3, bool camelid)
 
pose::Pose get_one_template_pose (std::string cdr_name)
 
bool is_camelid ()
 
void show (std::ostream &out=std::cout)
 

Private Member Functions

void set_default (bool camelid)
 
void obtain_templates_names ()
 

Private Attributes

bool load_L1_
 
bool load_L2_
 
bool load_L3_
 
bool load_H1_
 
bool load_H2_
 
bool load_H3_
 
TemplatePoseMap templates_poses_
 
pose::Pose L1_t_pose_
 
pose::Pose L2_t_pose_
 
pose::Pose L3_t_pose_
 
pose::Pose H1_t_pose_
 
pose::Pose H2_t_pose_
 
pose::Pose H3_t_pose_
 
std::string LightHeavy_t_name_
 
std::string Lfr_t_name_
 
std::string Hfr_t_name_
 
std::string L1_t_name_
 
std::string L2_t_name_
 
std::string L3_t_name_
 
std::string H1_t_name_
 
std::string H2_t_name_
 
std::string H3_t_name_
 
bool camelid_
 

Friends

std::ostream & operator<< (std::ostream &out, const Ab_TemplateInfo &ab_t_info)
 

Detailed Description

antibody2 definition

Definition at line 32 of file Ab_TemplateInfo.hh.

Member Typedef Documentation

typedef std::map<std::string, core::pose::Pose> protocols::antibody2::Ab_TemplateInfo::TemplatePoseMap

Definition at line 35 of file Ab_TemplateInfo.hh.

Constructor & Destructor Documentation

protocols::antibody2::Ab_TemplateInfo::Ab_TemplateInfo ( )

constructors

default constructor

Definition at line 36 of file Ab_TemplateInfo.cc.

protocols::antibody2::Ab_TemplateInfo::Ab_TemplateInfo ( bool  load_L1,
bool  load_L2,
bool  load_L3,
bool  load_H1,
bool  load_H2,
bool  load_H3 
)

constructor with arguments 1

Definition at line 42 of file Ab_TemplateInfo.cc.

protocols::antibody2::Ab_TemplateInfo::Ab_TemplateInfo ( bool  load_L1,
bool  load_L2,
bool  load_L3,
bool  load_H1,
bool  load_H2,
bool  load_H3,
bool  camelid 
)

constructor with arguments 1

Definition at line 51 of file Ab_TemplateInfo.cc.

Member Function Documentation

pose::Pose protocols::antibody2::Ab_TemplateInfo::get_one_template_pose ( std::string  cdr_name)

Definition at line 135 of file Ab_TemplateInfo.cc.

bool protocols::antibody2::Ab_TemplateInfo::is_camelid ( )
inline

Definition at line 49 of file Ab_TemplateInfo.hh.

void protocols::antibody2::Ab_TemplateInfo::load_templates_from_pdbs ( bool  load_L1,
bool  load_L2,
bool  load_L3,
bool  load_H1,
bool  load_H2,
bool  load_H3,
bool  camelid 
)

Definition at line 66 of file Ab_TemplateInfo.cc.

References core::import_pose::pose_from_pdb().

void protocols::antibody2::Ab_TemplateInfo::obtain_templates_names ( )
private

Definition at line 145 of file Ab_TemplateInfo.cc.

void protocols::antibody2::Ab_TemplateInfo::set_default ( bool  camelid)
private

Definition at line 119 of file Ab_TemplateInfo.cc.

void protocols::antibody2::Ab_TemplateInfo::show ( std::ostream &  out = std::cout)

Show the complete setup of the Ab_TemplateInfo

Definition at line 178 of file Ab_TemplateInfo.cc.

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out,
const Ab_TemplateInfo &  ab_t_info 
)
friend

Definition at line 185 of file Ab_TemplateInfo.cc.

Member Data Documentation

bool protocols::antibody2::Ab_TemplateInfo::camelid_
private

Definition at line 75 of file Ab_TemplateInfo.hh.

std::string protocols::antibody2::Ab_TemplateInfo::H1_t_name_
private

Definition at line 69 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

pose::Pose protocols::antibody2::Ab_TemplateInfo::H1_t_pose_
private

Definition at line 62 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

std::string protocols::antibody2::Ab_TemplateInfo::H2_t_name_
private

Definition at line 69 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

pose::Pose protocols::antibody2::Ab_TemplateInfo::H2_t_pose_
private

Definition at line 62 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

std::string protocols::antibody2::Ab_TemplateInfo::H3_t_name_
private

Definition at line 69 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

pose::Pose protocols::antibody2::Ab_TemplateInfo::H3_t_pose_
private

Definition at line 62 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

std::string protocols::antibody2::Ab_TemplateInfo::Hfr_t_name_
private

Definition at line 68 of file Ab_TemplateInfo.hh.

std::string protocols::antibody2::Ab_TemplateInfo::L1_t_name_
private

Definition at line 69 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

pose::Pose protocols::antibody2::Ab_TemplateInfo::L1_t_pose_
private

Definition at line 62 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

std::string protocols::antibody2::Ab_TemplateInfo::L2_t_name_
private

Definition at line 69 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

pose::Pose protocols::antibody2::Ab_TemplateInfo::L2_t_pose_
private

Definition at line 62 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

std::string protocols::antibody2::Ab_TemplateInfo::L3_t_name_
private

Definition at line 69 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

pose::Pose protocols::antibody2::Ab_TemplateInfo::L3_t_pose_
private

Definition at line 62 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

std::string protocols::antibody2::Ab_TemplateInfo::Lfr_t_name_
private

Definition at line 68 of file Ab_TemplateInfo.hh.

std::string protocols::antibody2::Ab_TemplateInfo::LightHeavy_t_name_
private

Definition at line 68 of file Ab_TemplateInfo.hh.

bool protocols::antibody2::Ab_TemplateInfo::load_H1_
private

Definition at line 58 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

bool protocols::antibody2::Ab_TemplateInfo::load_H2_
private

Definition at line 58 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

bool protocols::antibody2::Ab_TemplateInfo::load_H3_
private

Definition at line 58 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

bool protocols::antibody2::Ab_TemplateInfo::load_L1_
private

Definition at line 58 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

bool protocols::antibody2::Ab_TemplateInfo::load_L2_
private

Definition at line 58 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

bool protocols::antibody2::Ab_TemplateInfo::load_L3_
private

Definition at line 58 of file Ab_TemplateInfo.hh.

Referenced by protocols::antibody2::operator<<().

TemplatePoseMap protocols::antibody2::Ab_TemplateInfo::templates_poses_
private

Definition at line 61 of file Ab_TemplateInfo.hh.

The documentation for this class was generated from the following files:
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