Rosetta 3.5: protocols::frag_picker::CSTalosIO Class Reference

#include <CSTalosIO.hh>

Collaboration diagram for protocols::frag_picker::CSTalosIO:

Collaboration graph

Public Member Functions
	CSTalosIO ()

	CSTalosIO (std::string file_name)

utility::vector1 < utility::vector1< std::pair < Size, Real > > >	repack_to_matrix ()

Size	get_first_residue_id () const

Size	get_last_residue_id () const

std::string	get_sequence () const

bool	has_entry (Size residue_id)

void	get_tuples (Size, utility::vector1< boost::tuple< Size, char, std::string, Real > >)

void	get_tuples (Size, utility::vector1< boost::tuple< Size, char, std::string, Real > > &) const

utility::vector1< boost::tuple < Size, char, std::string, Real > >	get_entries ()

void	write (std::ostream &)

void	read (std::string const &)

Real	get_shift (Size, std::string const &) const

bool	has_atom (Size, std::string const &) const

Private Member Functions
void	print_sequence (std::string const &, std::ostream &) const

void	set_up_atom_order ()

Private Attributes
std::string	data_format_

std::string	sequence_

utility::vector1< std::string >	column_names_

Size	first_residue_index_

utility::vector1< boost::tuple < Size, char, std::string, Real > >	entries_

std::multimap< Size, Size >	resids_to_entries_map_

std::map< std::string, Size >	order_of_atoms_

utility::vector1< boost::tuple < Size, char, std::string, Real > >	used_for_searching_

Detailed Description

Definition at line 34 of file CSTalosIO.hh.

Constructor & Destructor Documentation

protocols::frag_picker::CSTalosIO::CSTalosIO ( )

inline

Definition at line 37 of file CSTalosIO.hh.

protocols::frag_picker::CSTalosIO::CSTalosIO ( std::string file_name)

inline

Definition at line 42 of file CSTalosIO.hh.

Member Function Documentation

utility::vector1<boost::tuple<Size, char, std::string, Real> > protocols::frag_picker::CSTalosIO::get_entries ( )

inline

Definition at line 76 of file CSTalosIO.hh.

Size protocols::frag_picker::CSTalosIO::get_first_residue_id ( ) const

inline

Definition at line 51 of file CSTalosIO.hh.

Size protocols::frag_picker::CSTalosIO::get_last_residue_id ( ) const

inline

Definition at line 55 of file CSTalosIO.hh.

std::string protocols::frag_picker::CSTalosIO::get_sequence ( ) const

inline

Definition at line 59 of file CSTalosIO.hh.

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift(), and repack_to_matrix().

Real protocols::frag_picker::CSTalosIO::get_shift	(	Size	residue_id,
		std::string const &	atom_name
	)		const

Definition at line 202 of file CSTalosIO.cc.

References get_tuples(), resids_to_entries_map_, and used_for_searching_.

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift().

void protocols::frag_picker::CSTalosIO::get_tuples	(	Size	residue_id,
		utility::vector1< boost::tuple< Size, char, std::string, Real > >	results
	)

Definition at line 149 of file CSTalosIO.cc.

References entries_, and resids_to_entries_map_.

Referenced by get_shift(), and has_atom().

void protocols::frag_picker::CSTalosIO::get_tuples	(	Size	residue_id,
		utility::vector1< boost::tuple< Size, char, std::string, Real > > &	results
	)		const

Definition at line 162 of file CSTalosIO.cc.

References entries_, and resids_to_entries_map_.

bool protocols::frag_picker::CSTalosIO::has_atom	(	Size	residue_id,
		std::string const &	atom_name
	)		const

Definition at line 176 of file CSTalosIO.cc.

References get_tuples(), resids_to_entries_map_, and used_for_searching_.

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift().

bool protocols::frag_picker::CSTalosIO::has_entry ( Size residue_id)

inline

Definition at line 63 of file CSTalosIO.hh.

void protocols::frag_picker::CSTalosIO::print_sequence	(	std::string const &	,
		std::ostream &
	)		const

private

void protocols::frag_picker::CSTalosIO::read ( std::string const & file_name)

Definition at line 54 of file CSTalosIO.cc.

References column_names_, data_format_, entries_, first_residue_index_, resids_to_entries_map_, sequence_, core::scoring::hbonds::t(), and protocols::frag_picker::tr().

utility::vector1< utility::vector1< std::pair< Size, Real > > > protocols::frag_picker::CSTalosIO::repack_to_matrix ( )

Definition at line 37 of file CSTalosIO.cc.

References entries_, get_sequence(), and order_of_atoms_.

void protocols::frag_picker::CSTalosIO::set_up_atom_order ( )

private

Definition at line 231 of file CSTalosIO.cc.

References order_of_atoms_.

void protocols::frag_picker::CSTalosIO::write ( std::ostream & out)

Definition at line 130 of file CSTalosIO.cc.

References column_names_, data_format_, entries_, first_residue_index_, and sequence_.

Referenced by protocols::frag_picker::scores::MakeAmbigCSScore::make().

Member Data Documentation

utility::vector1<std::string> protocols::frag_picker::CSTalosIO::column_names_

private

Definition at line 88 of file CSTalosIO.hh.

Referenced by read(), and write().

std::string protocols::frag_picker::CSTalosIO::data_format_

private

Definition at line 86 of file CSTalosIO.hh.

Referenced by read(), and write().

utility::vector1<boost::tuple<Size, char, std::string, Real> > protocols::frag_picker::CSTalosIO::entries_

private

Definition at line 90 of file CSTalosIO.hh.

Referenced by get_tuples(), read(), repack_to_matrix(), and write().

Size protocols::frag_picker::CSTalosIO::first_residue_index_

private

Definition at line 89 of file CSTalosIO.hh.

Referenced by read(), and write().

std::map<std::string, Size> protocols::frag_picker::CSTalosIO::order_of_atoms_

private

Definition at line 92 of file CSTalosIO.hh.

Referenced by repack_to_matrix(), and set_up_atom_order().

std::multimap<Size, Size> protocols::frag_picker::CSTalosIO::resids_to_entries_map_

private

Definition at line 91 of file CSTalosIO.hh.

Referenced by get_shift(), get_tuples(), has_atom(), and read().

std::string protocols::frag_picker::CSTalosIO::sequence_

private

Definition at line 87 of file CSTalosIO.hh.

Referenced by read(), and write().

utility::vector1<boost::tuple<Size, char, std::string, Real> > protocols::frag_picker::CSTalosIO::used_for_searching_

private

Definition at line 95 of file CSTalosIO.hh.

Referenced by get_shift(), and has_atom().

The documentation for this class was generated from the following files:

src/protocols/frag_picker/CSTalosIO.hh
src/protocols/frag_picker/CSTalosIO.cc