RNA_Fragments.hh

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file
/// @brief
/// @author  rhiju

#ifndef INCLUDED_protocols_rna_RNA_Fragments_HH
#define INCLUDED_protocols_rna_RNA_Fragments_HH

#include <protocols/rna/RNA_Fragments.fwd.hh>
#include <protocols/toolbox/AllowInsert.fwd.hh>
// AUTO-REMOVED #include <protocols/rna/RNA_MatchType.hh>
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <utility/pointer/ReferenceCount.hh>

#include <utility/vector1.hh>

#ifdef WIN32
  #include <protocols/toolbox/AllowInsert.hh>
#endif


namespace protocols{
namespace rna{

  class RNA_Fragments : public utility::pointer::ReferenceCount {
  public:

    //Constructor -- needs vall_torsions_file to get started.
    RNA_Fragments();

    virtual ~RNA_Fragments();

  public:

    //Probably the only thing that will actually get called publicly:
    virtual void
    apply_random_fragment(
                          core::pose::Pose & pose,
                          core::Size const position,
                          core::Size const size,
                          core::Size const type,
                          toolbox::AllowInsertOP allow_insert   );


    virtual bool
    is_fullatom();

  };

}
}

#endif