protocols::loops::Loop Class Reference

single loop definition More...

#include <Loop.hh>

Inheritance diagram for protocols::loops::Loop:

Collaboration diagram for protocols::loops::Loop:

Public Member Functions
virtual	~Loop ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
	Loop ()
	default constructor More...
	Loop (SerializedLoop loop)
	Loop (core::Size const start_in, core::Size const stop_in, core::Size const cut_in=0, core::Real skip_rate=0.0, bool const extended_in=false)
	input constructor More...
bool	is_extended () const
core::Size	start () const
core::Size	stop () const
core::Size	cut () const
core::Size	size () const
core::Real	skip_rate () const
void	set_extended (bool input)
void	set_start (core::Size input)
void	set_stop (core::Size input)
void	set_cut (core::Size input)
core::Size	length () const
	Assuming that the loop represents a contiguous stretch of residues, returns the length. Makes no assumptions about directionality. That is, Loop(3,8).length() == Loop(8,3).length(). Constant time procedure. More...
bool	increasing () const
	Returns true if the loop's elements are increasing. More...
bool	decreasing () const
	Returns true if the loop's elements are decreasing. More...
core::Size	midpoint () const
	Returns the midpoint of the loop. More...
bool	operator< (Loop const &larger) const
bool	operator== (Loop const &other) const
bool	operator!= (Loop const &other) const
void	get_residues (utility::vector1< Size > &selection) const
	add all residues within this loop definition into selection More...
void	switch_movemap (core::kinematics::MoveMap &movemap, core::id::TorsionType, bool allow_moves=true) const
	switch DOF_Type for residues in loop. id::CHI, id::BB — don't use with id::JUMP More...
void	choose_cutpoint (core::pose::Pose const &pose)
void	auto_choose_cutpoint (core::pose::Pose const &pose)
	Autochoose a cutpoint using the secondary structure of the pose unless cutpoint is already set. More...
bool	is_terminal (core::pose::Pose const &pose) const

Private Attributes
core::Size	start_
core::Size	stop_
core::Size	cut_
core::Real	skip_rate_
bool	extended_

Friends
std::ostream &	operator<< (std::ostream &os, const Loop &loop)

Detailed Description

single loop definition

Definition at line 53 of file Loop.hh.

Constructor & Destructor Documentation

protocols::loops::Loop::~Loop ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

Definition at line 38 of file Loop.cc.

protocols::loops::Loop::Loop ( )

inline

default constructor

Definition at line 58 of file Loop.hh.

protocols::loops::Loop::Loop ( SerializedLoop  loop)

inline

Definition at line 66 of file Loop.hh.

protocols::loops::Loop::Loop ( core::Size const  start_in, core::Size const  stop_in, core::Size const  cut_in = 0, core::Real  skip_rate = 0.0, bool const  extended_in = false  )

inline

input constructor

Definition at line 75 of file Loop.hh.

Member Function Documentation

void protocols::loops::Loop::auto_choose_cutpoint ( core::pose::Pose const &  pose)

inline

Autochoose a cutpoint using the secondary structure of the pose unless cutpoint is already set.

Definition at line 147 of file Loop.hh.

References choose_cutpoint(), and cut_.

Referenced by protocols::loops::loop_mover::IndependentLoopMover::apply().

void protocols::loops::Loop::choose_cutpoint

(

core::pose::Pose const &

pose)

Choose a cutpoint for the loop if one is not specified. Allow any residue to serve as the cutpoint, but prefer those to the center.

Definition at line 61 of file Loop.cc.

References core::conformation::Residue::aa(), core::chemical::aa_pro, cut_, core::pose::Pose::residue(), core::pose::Pose::secstruct(), start_, stop_, core::pose::Pose::total_residue(), and protocols::loops::tr().

Referenced by protocols::LoopRefine::apply(), auto_choose_cutpoint(), protocols::LoopRebuild::build_loop_with_ccd_closure(), protocols::abinitio::AbrelaxApplication::fold(), and protocols::protein_interface_design::movers::PlaceOnLoop::minimize_toward_stub().

core::Size protocols::loops::Loop::cut ( ) const

inline

Definition at line 90 of file Loop.hh.

References cut_.

Referenced by protocols::loops::Loops::add_loop(), protocols::loops::Loops::add_overlap_loop(), protocols::loops::add_single_cutpoint_variant(), protocols::antibody2::H3PerturbCCD::apply(), protocols::loops::loop_closure::ccd::CcdLoopClosureMover::apply(), protocols::antibody2::RefineOneCDRLoop::apply(), protocols::grafting::AnchoredGraftMover::apply(), protocols::loops::loop_closure::ccd::CcdMover::apply(), protocols::forge::remodel::RemodelLoopMover::boost_closure_stage(), protocols::LoopRebuild::build_loop_with_ccd_closure(), protocols::swa::protein::StepWiseProteinCCD_Closer::CCD_loop_close(), protocols::ligand_docking::MinimizeBackbone::create_fold_tree_with_cutpoints(), protocols::loops::loop_mover::perturb::fast_ccd_close_loops(), protocols::forge::methods::fold_tree_from_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::generate_window_list(), protocols::loops::loop_closure::ccd::CcdLoopClosureMover::get_loop_cut(), protocols::forge::remodel::RemodelLoopMover::independent_stage(), protocols::antibody2::H3RefineCCD::init(), protocols::swa::protein::StepWiseProteinLoopBridger::KIC_loop_close(), protocols::forge::remodel::RemodelLoopMover::loophash_stage(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::model_loop(), operator<(), operator==(), protocols::loops::remove_missing_density(), protocols::ligand_docking::LigandBaseProtocol::reorder_foldtree_around_mobile_regions(), protocols::forge::remodel::RemodelLoopMover::repeat_generation(), protocols::forge::remodel::RemodelLoopMover::repeat_generation_with_additional_residue(), protocols::forge::remodel::RemodelLoopMover::repeat_propagation(), protocols::antibody::CDRH3Modeler::scored_frag_close(), protocols::loops::set_single_loop_fold_tree(), protocols::loops::loop_closure::ccd::ShortLoopClosure::ShortLoopClosure(), protocols::antibody2::simple_one_loop_fold_tree(), and protocols::antibody::simple_one_loop_fold_tree().

bool protocols::loops::Loop::decreasing ( ) const

inline

Returns true if the loop's elements are decreasing.

Definition at line 114 of file Loop.hh.

References increasing().

void protocols::loops::Loop::get_residues

(

utility::vector1< Size > &

selection)

const

add all residues within this loop definition into selection

Definition at line 128 of file Loop.cc.

References start_, and stop_.

bool protocols::loops::Loop::increasing ( ) const

inline

Returns true if the loop's elements are increasing.

Definition at line 109 of file Loop.hh.

References start(), and stop().

Referenced by decreasing(), and midpoint().

bool protocols::loops::Loop::is_extended ( ) const

inline

Definition at line 87 of file Loop.hh.

References extended_.

Referenced by protocols::loops::Loops::add_overlap_loop(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::loops::loop_closure::ccd::CcdLoopClosureMover::get_loop_extended(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), and protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::model_loop().

bool protocols::loops::Loop::is_terminal

(

core::pose::Pose const &

pose)

const

Detect a terminal loop, logic is more complicated for multi-chain poses. Returns TRUE for terminal loops.

Definition at line 139 of file Loop.cc.

References core::pose::Pose::chain(), core::conformation::Residue::is_lower_terminus(), core::conformation::Residue::is_protein(), core::conformation::Residue::is_upper_terminus(), core::pose::Pose::residue(), start(), stop(), and core::pose::Pose::total_residue().

Referenced by protocols::forge::remodel::RemodelLoopMover::independent_stage(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), and protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop().

core::Size protocols::loops::Loop::length ( ) const

inline

Assuming that the loop represents a contiguous stretch of residues, returns the length. Makes no assumptions about directionality. That is, Loop(3,8).length() == Loop(8,3).length(). Constant time procedure.

Definition at line 102 of file Loop.hh.

References start(), and stop().

Referenced by protocols::nonlocal::avg_ca_position(), protocols::hybridization::HybridizeFoldtreeDynamic::choose_anchor_position(), protocols::nonlocal::StarTreeBuilder::choose_anchor_position(), protocols::medal::chunk_probabilities(), protocols::nonlocal::decompose(), protocols::nonlocal::HelixRotate::get_rotation_parameters(), midpoint(), and protocols::antibody2::operator<<().

core::Size protocols::loops::Loop::midpoint ( ) const

inline

Returns the midpoint of the loop.

Definition at line 119 of file Loop.hh.

References increasing(), length(), start(), and stop().

Referenced by protocols::nonlocal::HelixRotate::get_rotation_parameters().

bool protocols::loops::Loop::operator!= ( Loop const &  other) const

inline

Definition at line 131 of file Loop.hh.

bool protocols::loops::Loop::operator< ( Loop const &  larger) const

inline

Definition at line 123 of file Loop.hh.

References cut(), size(), and start().

bool protocols::loops::Loop::operator== ( Loop const &  other) const

inline

Definition at line 127 of file Loop.hh.

References cut(), size(), and start().

void protocols::loops::Loop::set_cut ( core::Size  input)

inline

Definition at line 97 of file Loop.hh.

References cut_.

void protocols::loops::Loop::set_extended ( bool  input)

inline

Definition at line 94 of file Loop.hh.

References extended_.

void protocols::loops::Loop::set_start ( core::Size  input)

inline

Definition at line 95 of file Loop.hh.

References start_.

Referenced by protocols::loops::find_non_protein_chunks(), protocols::abinitio::AbrelaxApplication::fold(), protocols::loops::Loops::grow_loop(), protocols::hybridization::FoldTreeHybridize::setup_foldtree(), protocols::loops::split_by_ca_ca_dist(), and protocols::loops::split_by_resSeq().

void protocols::loops::Loop::set_stop ( core::Size  input)

inline

Definition at line 96 of file Loop.hh.

References stop_.

Referenced by protocols::loops::find_non_protein_chunks(), protocols::loops::Loops::grow_loop(), protocols::loops::remove_small_gaps(), protocols::hybridization::FoldTreeHybridize::setup_foldtree(), protocols::loops::split_by_ca_ca_dist(), and protocols::loops::split_by_resSeq().

core::Size protocols::loops::Loop::size ( ) const

inline

Definition at line 91 of file Loop.hh.

References start_, and stop_.

Referenced by protocols::loops::loop_closure::ccd::ShortLoopClosure::apply(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::antibody2::H3PerturbCCD::apply(), protocols::hybridization::CartesianHybridize::apply_frag(), protocols::antibody::CDRH3Modeler::build_centroid_loop(), protocols::loops::loop_closure::ccd::CcdLoopClosureMover::get_loop_size(), protocols::loops::loop_closure::ccd::LoopClosure::init(), operator<(), operator==(), protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure::sample_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::sample_loops(), protocols::antibody::CDRH3Modeler::scored_frag_close(), protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure::select_final_loop(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::select_final_loop(), protocols::loops::loop_closure::ccd::LoopClosure::set_cycles(), and protocols::loops::loop_closure::ccd::ShortLoopClosure::ShortLoopClosure().

core::Real protocols::loops::Loop::skip_rate ( ) const

inline

Definition at line 92 of file Loop.hh.

References skip_rate_.

Referenced by protocols::loops::Loops::add_overlap_loop(), and protocols::loops::loop_closure::ccd::CcdLoopClosureMover::get_loop_skip_rate().

core::Size protocols::loops::Loop::start ( ) const

inline

Definition at line 88 of file Loop.hh.

References start_.

Referenced by protocols::loops::Loops::add_loop(), protocols::loops::Loops::add_overlap_loop(), protocols::loops::loop_closure::ccd::ShortLoopClosure::apply(), protocols::nonlocal::SheetTranslate::apply(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::antibody2::RefineOneCDRLoopCentroid::apply(), protocols::antibody2::H3PerturbCCD::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::loops::loop_closure::ccd::LoopClosure::apply(), protocols::loops::loop_closure::ccd::CcdLoopClosureMover::apply(), protocols::antibody2::RefineOneCDRLoop::apply(), protocols::loops::loop_closure::ccd::CcdMover::apply(), protocols::hybridization::CartesianHybridize::apply_frag(), protocols::nonlocal::avg_ca_position(), protocols::forge::remodel::RemodelLoopMover::boost_closure_stage(), protocols::comparative_modeling::bounded_loops_from_alignment(), protocols::loops::loop_closure::ccd::ShortLoopClosure::catch_fragment(), protocols::swa::protein::StepWiseProteinCCD_Closer::CCD_loop_close(), protocols::swa::protein::StepWiseProteinCCD_Closer::CCD_loop_close_sample_omega_recursively(), protocols::antibody2::CDR_H3_filter_legacy_code_with_old_rule(), protocols::hybridization::HybridizeFoldtreeDynamic::choose_anchor_position(), protocols::nonlocal::StarTreeBuilder::choose_anchor_position(), protocols::medal::chunk_probabilities(), protocols::nonlocal::chunks_by_CA_CA_distance(), protocols::rigid::RigidBodyMotionMover::compute_bias(), protocols::ligand_docking::MinimizeBackbone::create_fold_tree_with_cutpoints(), protocols::nonlocal::decompose(), protocols::nonlocal::SheetTranslate::decompose_structure(), protocols::nonlocal::HelixRotate::decompose_structure(), protocols::star::Extender::extend_unaligned(), protocols::loops::loop_mover::perturb::fast_ccd_close_loops(), protocols::forge::methods::fill_non_loop_cst_set(), protocols::abinitio::AbrelaxApplication::fold(), protocols::forge::methods::fold_tree_from_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::generate_window_list(), protocols::antibody2::AntibodyInfo::get_CDR_Sequence_with_Stem(), protocols::loops::loop_closure::ccd::CcdLoopClosureMover::get_loop_start(), protocols::nonlocal::HelixRotate::get_rotation_parameters(), protocols::loophash::LoopHashLibrary::graft_loop(), protocols::loops::Loops::grow_loop(), protocols::loops::Loops::grow_loop_away_from_sheets(), protocols::loops::idealize_loop(), increasing(), protocols::forge::remodel::RemodelLoopMover::independent_stage(), protocols::antibody2::H3RefineCCD::init(), protocols::loops::loop_closure::ccd::LoopClosure::init(), protocols::loops::Loops::invert(), is_terminal(), protocols::nonlocal::SheetTranslate::is_valid(), protocols::nonlocal::HelixRotate::is_valid(), protocols::nonlocal::HelixRotate::jump_containing_helix(), protocols::nonlocal::SheetTranslate::jump_containing_sheet(), protocols::swa::protein::StepWiseProteinLoopBridger::KIC_loop_close(), length(), protocols::forge::remodel::RemodelLoopMover::loophash_stage(), protocols::forge::remodel::RemodelLoopMover::mark_loop_moveable(), midpoint(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::model_loop(), protocols::loops::RationalLoopComparator::operator()(), protocols::loops::Loop_lt::operator()(), operator<(), operator==(), protocols::loops::remove_missing_density(), protocols::ligand_docking::LigandBaseProtocol::reorder_foldtree_around_mobile_regions(), protocols::forge::remodel::RemodelLoopMover::repeat_generation(), protocols::forge::remodel::RemodelLoopMover::repeat_generation_with_additional_residue(), protocols::forge::remodel::RemodelLoopMover::repeat_propagation(), protocols::forge::remodel::RemodelLoopMover::repeat_sync(), protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure::sample_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::sample_loops(), protocols::antibody::CDRH3Modeler::scored_frag_close(), protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure::select_final_loop(), protocols::loops::loop_mover::LoopMover::set_extended_torsions(), protocols::loops::set_extended_torsions(), protocols::loops::set_extended_torsions_and_idealize_loops(), protocols::loops::set_move_map_for_centroid_loop(), protocols::loops::set_single_loop_fold_tree(), protocols::star::setup_constraints(), protocols::medal::setup_coordinate_constraints(), protocols::loops::loop_closure::ccd::ShortLoopClosure::ShortLoopClosure(), protocols::antibody2::simple_one_loop_fold_tree(), protocols::antibody::simple_one_loop_fold_tree(), and switch_movemap().

core::Size protocols::loops::Loop::stop ( ) const

inline

Definition at line 89 of file Loop.hh.

References stop_.

Referenced by protocols::loops::Loops::add_loop(), protocols::loops::Loops::add_overlap_loop(), protocols::nonlocal::SheetTranslate::apply(), protocols::loops::loop_mover::IndependentLoopMover::apply(), protocols::antibody2::RefineOneCDRLoopCentroid::apply(), protocols::antibody2::H3PerturbCCD::apply(), protocols::protein_interface_design::movers::LoopRemodel::apply(), protocols::loops::loop_closure::ccd::LoopClosure::apply(), protocols::loops::loop_closure::ccd::CcdLoopClosureMover::apply(), protocols::antibody2::RefineOneCDRLoop::apply(), protocols::loops::loop_closure::ccd::CcdMover::apply(), protocols::hybridization::CartesianHybridize::apply_frag(), protocols::nonlocal::avg_ca_position(), protocols::forge::remodel::RemodelLoopMover::boost_closure_stage(), protocols::comparative_modeling::bounded_loops_from_alignment(), protocols::swa::protein::StepWiseProteinCCD_Closer::CCD_loop_close(), protocols::swa::protein::StepWiseProteinCCD_Closer::CCD_loop_close_sample_omega_recursively(), protocols::antibody2::CDR_H3_filter_legacy_code_with_old_rule(), protocols::hybridization::HybridizeFoldtreeDynamic::choose_anchor_position(), protocols::nonlocal::StarTreeBuilder::choose_anchor_position(), protocols::medal::chunk_probabilities(), protocols::nonlocal::chunks_by_CA_CA_distance(), protocols::rigid::RigidBodyMotionMover::compute_bias(), protocols::ligand_docking::MinimizeBackbone::create_fold_tree_with_cutpoints(), protocols::nonlocal::decompose(), protocols::nonlocal::SheetTranslate::decompose_structure(), protocols::nonlocal::HelixRotate::decompose_structure(), protocols::antibody2::AntibodyInfo::detect_and_set_camelid_CDR_H3_stem_type(), protocols::antibody2::AntibodyInfo::detect_and_set_regular_CDR_H3_stem_type(), protocols::antibody2::AntibodyInfo::detect_and_set_regular_CDR_H3_stem_type_new_rule(), protocols::star::Extender::extend_unaligned(), protocols::loops::loop_mover::perturb::fast_ccd_close_loops(), protocols::forge::methods::fill_non_loop_cst_set(), protocols::forge::methods::fold_tree_from_loops(), protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure::generate_window_list(), protocols::antibody2::AntibodyInfo::get_CDR_Sequence_with_Stem(), protocols::loops::loop_closure::ccd::CcdLoopClosureMover::get_loop_stop(), protocols::nonlocal::HelixRotate::get_rotation_parameters(), protocols::loophash::LoopHashLibrary::graft_loop(), protocols::loops::Loops::grow_loop(), protocols::loops::Loops::grow_loop_away_from_sheets(), protocols::loops::idealize_loop(), increasing(), protocols::forge::remodel::RemodelLoopMover::independent_stage(), protocols::antibody2::H3RefineCCD::init(), protocols::loops::loop_closure::ccd::LoopClosure::init(), protocols::loops::Loops::invert(), is_terminal(), protocols::nonlocal::SheetTranslate::is_valid(), protocols::nonlocal::HelixRotate::is_valid(), protocols::swa::protein::StepWiseProteinLoopBridger::KIC_loop_close(), length(), protocols::forge::remodel::RemodelLoopMover::loophash_stage(), protocols::forge::remodel::RemodelLoopMover::mark_loop_moveable(), midpoint(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_Moves::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::model_loop(), protocols::loop_build::LoopMover_SlidingWindow::model_loop(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD::model_loop(), protocols::loops::Loop_lt::operator()(), protocols::loops::remove_missing_density(), protocols::ligand_docking::LigandBaseProtocol::reorder_foldtree_around_mobile_regions(), protocols::forge::remodel::RemodelLoopMover::repeat_generation(), protocols::forge::remodel::RemodelLoopMover::repeat_generation_with_additional_residue(), protocols::forge::remodel::RemodelLoopMover::repeat_propagation(), protocols::forge::remodel::RemodelLoopMover::repeat_sync(), protocols::antibody::CDRH3Modeler::scored_frag_close(), protocols::loops::loop_mover::LoopMover::set_extended_torsions(), protocols::loops::set_extended_torsions(), protocols::loops::set_extended_torsions_and_idealize_loops(), protocols::loops::set_move_map_for_centroid_loop(), protocols::loops::set_single_loop_fold_tree(), protocols::nonlocal::StarTreeBuilder::set_up(), protocols::star::setup_constraints(), protocols::medal::setup_coordinate_constraints(), protocols::loops::loop_closure::ccd::ShortLoopClosure::ShortLoopClosure(), protocols::antibody2::simple_one_loop_fold_tree(), protocols::antibody::simple_one_loop_fold_tree(), switch_movemap(), and protocols::hybridization::HybridizeFoldtreeDynamic::update().

void protocols::loops::Loop::switch_movemap	(	core::kinematics::MoveMap &	movemap,
		core::id::TorsionType	id,
		bool	allow_moves = true
	)		const

switch DOF_Type for residues in loop. id::CHI, id::BB — don't use with id::JUMP

Definition at line 46 of file Loop.cc.

References core::kinematics::MoveMap::set(), start(), and stop().

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os, const Loop &  loop  )

friend

Definition at line 164 of file Loop.hh.

Member Data Documentation

core::Size protocols::loops::Loop::cut_

private

Definition at line 158 of file Loop.hh.

Referenced by auto_choose_cutpoint(), choose_cutpoint(), cut(), protocols::loops::operator<<(), and set_cut().

bool protocols::loops::Loop::extended_

private

Definition at line 160 of file Loop.hh.

Referenced by is_extended(), protocols::loops::operator<<(), and set_extended().

core::Real protocols::loops::Loop::skip_rate_

private

Definition at line 159 of file Loop.hh.

Referenced by protocols::loops::operator<<(), and skip_rate().

core::Size protocols::loops::Loop::start_

private

Definition at line 156 of file Loop.hh.

Referenced by choose_cutpoint(), get_residues(), protocols::loops::operator<<(), set_start(), size(), and start().

core::Size protocols::loops::Loop::stop_

private

Definition at line 157 of file Loop.hh.

Referenced by choose_cutpoint(), get_residues(), protocols::loops::operator<<(), set_stop(), size(), and stop().

---

The documentation for this class was generated from the following files:

• src/protocols/loops/Loop.hh
• src/protocols/loops/Loop.cc