| ab_sequence_ | protocols::antibody2::AntibodyInfo | private |
| AntibodyInfo(pose::Pose const &pose, AntibodyNumberingEnum const &numbering_scheme=Aroop, bool const &cdr_pdb_numbered=true) | protocols::antibody2::AntibodyInfo | |
| cdr_pdb_numbered_ | protocols::antibody2::AntibodyInfo | private |
| detect_and_set_camelid_CDR_H3_stem_type(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| detect_and_set_regular_CDR_H3_stem_type(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| detect_and_set_regular_CDR_H3_stem_type_new_rule(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| framework_info_ | protocols::antibody2::AntibodyInfo | private |
| get_Ab_Sequence() const | protocols::antibody2::AntibodyInfo | inline |
| get_AllCDRs_in_loopsop() const | protocols::antibody2::AntibodyInfo | inline |
| get_AntibodyFrameworkInfo() const | protocols::antibody2::AntibodyInfo | inline |
| get_CDR_in_loopsop(AntibodyCDRNameEnum const &cdr_name) const | protocols::antibody2::AntibodyInfo | inline |
| get_CDR_loop(AntibodyCDRNameEnum const &cdr_name) const | protocols::antibody2::AntibodyInfo | inline |
| get_CDR_Name(AntibodyCDRNameEnum const &cdr_name) const | protocols::antibody2::AntibodyInfo | inline |
| get_CDR_NumberingInfo(AntibodyNumberingEnum const &numbering_scheme) const | protocols::antibody2::AntibodyInfo | private |
| get_CDR_Sequence_with_Stem(AntibodyCDRNameEnum const &cdr_name, Size left_stem=0, Size right_stem=0) const | protocols::antibody2::AntibodyInfo | |
| get_Current_AntibodyNumberingScheme() const | protocols::antibody2::AntibodyInfo | inline |
| get_Dock_ScoreFxn(void) | protocols::antibody2::AntibodyInfo | privatestatic |
| get_FoldTree_AllCDRs(pose::Pose const &pose) const | protocols::antibody2::AntibodyInfo | |
| get_FoldTree_AllCDRs_LHDock(pose::Pose &pose) const | protocols::antibody2::AntibodyInfo | |
| get_FoldTree_L_HA(pose::Pose const &pose) const | protocols::antibody2::AntibodyInfo | |
| get_FoldTree_LA_H(pose::Pose const &pose) const | protocols::antibody2::AntibodyInfo | |
| get_FoldTree_LH_A(pose::Pose const &pose) const | protocols::antibody2::AntibodyInfo | |
| get_LoopCentral_ScoreFxn(void) | protocols::antibody2::AntibodyInfo | privatestatic |
| get_LoopHighRes_ScoreFxn(void) | protocols::antibody2::AntibodyInfo | privatestatic |
| get_MoveMap_for_Loops(pose::Pose const &pose, loops::Loops const &the_loops, bool const &bb_only=false, bool const &include_nb_sc=false, Real const &nb_dist=10.0) const | protocols::antibody2::AntibodyInfo | |
| get_MoveMap_for_LoopsandDock(pose::Pose const &pose, loops::Loops const &the_loops, bool const &bb_only=false, bool const &include_nb_sc=false, Real const &nb_dist=10.0) const | protocols::antibody2::AntibodyInfo | |
| get_Pack_ScoreFxn(void) | protocols::antibody2::AntibodyInfo | privatestatic |
| get_PackingAngleResidues() const | protocols::antibody2::AntibodyInfo | inline |
| get_PoseHasAntigen() const | protocols::antibody2::AntibodyInfo | inline |
| get_Predicted_H3BaseType() const | protocols::antibody2::AntibodyInfo | inline |
| get_string_cdr_name(void) | protocols::antibody2::AntibodyInfo | privatestatic |
| get_string_h3_base_type(void) | protocols::antibody2::AntibodyInfo | privatestatic |
| get_string_numbering_scheme(void) | protocols::antibody2::AntibodyInfo | privatestatic |
| get_TaskFactory_AllCDRs(pose::Pose &pose) const | protocols::antibody2::AntibodyInfo | |
| get_TaskFactory_OneCDR(pose::Pose &pose, AntibodyCDRNameEnum const &cdr_name) const | protocols::antibody2::AntibodyInfo | |
| get_TotalNumCDRs() const | protocols::antibody2::AntibodyInfo | inline |
| identify_antibody(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| identify_CDR_from_a_sequence(std::string const &querychain) | protocols::antibody2::AntibodyInfo | private |
| init(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| InputPose_has_antigen_ | protocols::antibody2::AntibodyInfo | private |
| is_Camelid() const | protocols::antibody2::AntibodyInfo | inline |
| is_camelid_ | protocols::antibody2::AntibodyInfo | private |
| loopsop_having_allcdrs_ | protocols::antibody2::AntibodyInfo | private |
| numbering_scheme_ | protocols::antibody2::AntibodyInfo | private |
| operator<<(std::ostream &out, const AntibodyInfo &ab_info) | protocols::antibody2::AntibodyInfo | friend |
| packing_angle_residues_ | protocols::antibody2::AntibodyInfo | private |
| predict_H3_base_type(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| predicted_H3_base_type_ | protocols::antibody2::AntibodyInfo | private |
| set_default() | protocols::antibody2::AntibodyInfo | private |
| setup_CDRsInfo(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| setup_FrameWorkInfo(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| setup_simple_fold_tree(Size const &jumppoint1, Size const &cutpoint, Size const &jumppoint2, pose::Pose const &pose) const | protocols::antibody2::AntibodyInfo | |
| setup_VL_VH_packing_angle(pose::Pose const &pose) | protocols::antibody2::AntibodyInfo | private |
| show(std::ostream &out=std::cout) | protocols::antibody2::AntibodyInfo | |
| total_cdr_loops_ | protocols::antibody2::AntibodyInfo | private |
| vector1_loopsop_having_cdr_ | protocols::antibody2::AntibodyInfo | private |
1.8.4