Rosetta 3.5
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::Operator Class Reference

simply take a list of filters and combine them using the operation above More...

#include <OperatorFilter.hh>

Inheritance diagram for protocols::simple_filters::Operator:
Inheritance graph
[legend]
Collaboration diagram for protocols::simple_filters::Operator:
Collaboration graph
[legend]

Public Member Functions

 Operator ()
 
virtual ~Operator ()
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
virtual bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
void parse_my_tag (utility::tag::TagPtr const tag, moves::DataMap &, filters::Filters_map const &filters, moves::Movers_map const &, core::pose::Pose const &)
 
core::Real compute (core::pose::Pose const &pose) const
 
utility::vector1
< protocols::filters::FilterOP > 		filters () const
 
void add_filter (protocols::filters::FilterOP f)
 
void reset_baseline (core::pose::Pose const &pose, bool const attempt_read_from_checkpoint)
 
core::Real threshold () const
 goes over Sigmoid filters and resets them. Note that this is nonconst, and cannot be called from apply More...
 
void threshold (core::Real const t)
 
Operation operation () const
 
void operation (Operation const o)
 
void negate (bool const b)
 
bool negate () const
 
utility::vector1< std::string > relative_pose_names ()
 
void relative_pose_names (utility::vector1< std::string > const s)
 
bool multi_relative () const
 
void multi_relative (bool const m)
 
void modify_relative_filters_pdb_names ()
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

utility::vector1
< protocols::filters::FilterOP > 		filters_
 
Operation operation_
 
core::Real threshold_
 
bool negate_
 
utility::vector1< std::string > relative_pose_names_
 
bool multi_relative_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Detailed Description

simply take a list of filters and combine them using the operation above

Definition at line 30 of file OperatorFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::Operator::Operator ( )

Definition at line 42 of file OperatorFilter.cc.

References filters_.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::Operator::~Operator ( )
virtual

Definition at line 51 of file OperatorFilter.cc.

Member Function Documentation

void protocols::simple_filters::Operator::add_filter ( protocols::filters::FilterOP  f)

Definition at line 248 of file OperatorFilter.cc.

References filters_.

Referenced by modify_relative_filters_pdb_names(), and parse_my_tag().

bool protocols::simple_filters::Operator::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 163 of file OperatorFilter.cc.

References compute(), negate(), and threshold().

filters::FilterOP protocols::simple_filters::Operator::clone ( ) const
inlinevirtual

Implements protocols::filters::Filter.

Definition at line 35 of file OperatorFilter.hh.

References Operator().

core::Real protocols::simple_filters::Operator::compute ( core::pose::Pose const &  pose) const

Definition at line 186 of file OperatorFilter.cc.

References protocols::simple_filters::ABS, protocols::simple_filters::BOOLEAN_OR, filters(), protocols::simple_filters::MAX, protocols::simple_filters::MIN, negate(), protocols::simple_filters::NORMALIZED_SUM, operation(), protocols::simple_filters::PRODUCT, report_sm(), core::io::serialization::size(), protocols::simple_filters::SUBTRACT, and protocols::simple_filters::SUM.

Referenced by apply(), report(), and report_sm().

utility::vector1< protocols::filters::FilterOP > protocols::simple_filters::Operator::filters ( ) const

Definition at line 245 of file OperatorFilter.cc.

References filters_.

Referenced by compute(), and reset_baseline().

filters::FilterOP protocols::simple_filters::Operator::fresh_instance ( ) const
inlinevirtual

Implements protocols::filters::Filter.

Definition at line 38 of file OperatorFilter.hh.

References Operator().

void protocols::simple_filters::Operator::modify_relative_filters_pdb_names ( )

Definition at line 91 of file OperatorFilter.cc.

References add_filter(), filters_, and relative_pose_names_.

Referenced by parse_my_tag().

bool protocols::simple_filters::Operator::multi_relative ( ) const
inline

Definition at line 58 of file OperatorFilter.hh.

References multi_relative_.

Referenced by parse_my_tag().

void protocols::simple_filters::Operator::multi_relative ( bool const  m)
inline

Definition at line 59 of file OperatorFilter.hh.

References multi_relative_.

void protocols::simple_filters::Operator::negate ( bool const  b)
inline

Definition at line 54 of file OperatorFilter.hh.

References protocols::match::upstream::b, and negate_.

bool protocols::simple_filters::Operator::negate ( ) const
inline

Definition at line 55 of file OperatorFilter.hh.

References negate_.

Referenced by apply(), compute(), and parse_my_tag().

Operation protocols::simple_filters::Operator::operation ( ) const
inline

Definition at line 52 of file OperatorFilter.hh.

References operation_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::Operator::operation ( Operation const  o)
inline

Definition at line 53 of file OperatorFilter.hh.

References operation_.

void protocols::simple_filters::Operator::parse_my_tag ( utility::tag::TagPtr const  tag,
moves::DataMap &  ,
filters::Filters_map const &  filters,
moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual

Reimplemented from protocols::filters::Filter.

Definition at line 120 of file OperatorFilter.cc.

References protocols::simple_filters::ABS, add_filter(), protocols::simple_filters::BOOLEAN_OR, filters_, protocols::simple_filters::MAX, protocols::simple_filters::MIN, modify_relative_filters_pdb_names(), multi_relative(), negate(), protocols::simple_filters::NORMALIZED_SUM, operation(), protocols::rosetta_scripts::parse_filter(), protocols::simple_filters::PRODUCT, relative_pose_names_, protocols::simple_filters::SUBTRACT, protocols::simple_filters::SUM, and threshold().

utility::vector1< std::string > protocols::simple_filters::Operator::relative_pose_names ( )
inline

Definition at line 56 of file OperatorFilter.hh.

References relative_pose_names_.

void protocols::simple_filters::Operator::relative_pose_names ( utility::vector1< std::string > const  s)
inline

Definition at line 57 of file OperatorFilter.hh.

References relative_pose_names_.

void protocols::simple_filters::Operator::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

Definition at line 173 of file OperatorFilter.cc.

References compute().

core::Real protocols::simple_filters::Operator::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 179 of file OperatorFilter.cc.

References compute().

Referenced by compute().

void protocols::simple_filters::Operator::reset_baseline ( core::pose::Pose const &  pose,
bool const  attempt_read_from_checkpoint 
)

Definition at line 54 of file OperatorFilter.cc.

References filters().

core::Real protocols::simple_filters::Operator::threshold ( ) const
inline

goes over Sigmoid filters and resets them. Note that this is nonconst, and cannot be called from apply

Definition at line 50 of file OperatorFilter.hh.

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::Operator::threshold ( core::Real const  t)
inline

Definition at line 51 of file OperatorFilter.hh.

References core::scoring::hbonds::t(), and threshold_.

Member Data Documentation

utility::vector1< protocols::filters::FilterOP > protocols::simple_filters::Operator::filters_
private

Definition at line 62 of file OperatorFilter.hh.

Referenced by add_filter(), filters(), modify_relative_filters_pdb_names(), Operator(), and parse_my_tag().

bool protocols::simple_filters::Operator::multi_relative_
private

Definition at line 67 of file OperatorFilter.hh.

Referenced by multi_relative().

bool protocols::simple_filters::Operator::negate_
private

Definition at line 65 of file OperatorFilter.hh.

Referenced by negate().

Operation protocols::simple_filters::Operator::operation_
private

Definition at line 63 of file OperatorFilter.hh.

Referenced by operation().

utility::vector1< std::string > protocols::simple_filters::Operator::relative_pose_names_
private

Definition at line 66 of file OperatorFilter.hh.

Referenced by modify_relative_filters_pdb_names(), parse_my_tag(), and relative_pose_names().

core::Real protocols::simple_filters::Operator::threshold_
private

Definition at line 64 of file OperatorFilter.hh.

Referenced by threshold().

The documentation for this class was generated from the following files:
Generated on Sat Jun 1 2013 12:52:41 for Rosetta 3.5 by   doxygen 1.8.4