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protocols::toolbox::match_enzdes_util::ResInteractions Class Reference

#include <EnzdesLoopsFile.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::ResInteractions:
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Public Member Functions

 ResInteractions ()
 
virtual ~ResInteractions ()
 
virtual bool read_data (utility::io::izstream &data)
 
virtual void write_data () const
 
core::Size targ_res () const
 
utility::vector1< std::string >
const & 		targ_atom_names () const
 
utility::vector1< std::string >
const & 		targ_base_atom_names () const
 
utility::vector1< std::string >
const & 		targ_base2_atom_names () const
 
utility::vector1< std::string >
const & 		loopres_atom_names () const
 
utility::vector1< std::string >
const & 		loopres_base_atom_names () const
 
utility::vector1< std::string >
const & 		loopres_base2_atom_names () const
 
core::Size num_interactions () const
 
toolbox::match_enzdes_util::GeomSampleInfoCOP dis () const
 
toolbox::match_enzdes_util::GeomSampleInfoCOP loop_ang () const
 
toolbox::match_enzdes_util::GeomSampleInfoCOP targ_ang () const
 
toolbox::match_enzdes_util::GeomSampleInfoCOP loop_dih () const
 
toolbox::match_enzdes_util::GeomSampleInfoCOP targ_dih () const
 
toolbox::match_enzdes_util::GeomSampleInfoCOP lt_dih () const
 

Protected Member Functions

bool process_input_line_tokens (utility::vector1< std::string > const &tokens)
 
void set_targ_res (core::Size targ_res)
 
void set_targ_atom_names (utility::vector1< std::string > const &t_atom_names)
 
void set_loopres_atom_names (utility::vector1< std::string > const &l_atom_names)
 

Private Attributes

core::Size targ_res_
 
utility::vector1< std::string > targ_atom_names_
 
utility::vector1< std::string > targ_base_atom_names_
 
utility::vector1< std::string > targ_base2_atom_names_
 
core::Size num_interactions_
 
toolbox::match_enzdes_util::GeomSampleInfoOP dis_
 
toolbox::match_enzdes_util::GeomSampleInfoOP loop_ang_
 
toolbox::match_enzdes_util::GeomSampleInfoOP targ_ang_
 
toolbox::match_enzdes_util::GeomSampleInfoOP loop_dih_
 
toolbox::match_enzdes_util::GeomSampleInfoOP targ_dih_
 
toolbox::match_enzdes_util::GeomSampleInfoOP lt_dih_
 
utility::vector1< std::string > loopres_atom_names_
 
utility::vector1< std::string > loopres_base_atom_names_
 
utility::vector1< std::string > loopres_base2_atom_names_
 

Detailed Description

Definition at line 46 of file EnzdesLoopsFile.hh.

Constructor & Destructor Documentation

protocols::toolbox::match_enzdes_util::ResInteractions::ResInteractions ( )

Definition at line 47 of file EnzdesLoopsFile.cc.

References loopres_atom_names_, and targ_atom_names_.

protocols::toolbox::match_enzdes_util::ResInteractions::~ResInteractions ( )
virtual

Definition at line 56 of file EnzdesLoopsFile.cc.

Member Function Documentation

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::dis ( ) const

Definition at line 116 of file EnzdesLoopsFile.cc.

References dis_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::loop_ang ( ) const

Definition at line 120 of file EnzdesLoopsFile.cc.

References loop_ang_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::loop_dih ( ) const

Definition at line 128 of file EnzdesLoopsFile.cc.

References loop_dih_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::loopres_atom_names ( ) const
inline

Definition at line 79 of file EnzdesLoopsFile.hh.

References loopres_atom_names_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::loopres_base2_atom_names ( ) const
inline

Definition at line 87 of file EnzdesLoopsFile.hh.

References loopres_base2_atom_names_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::loopres_base_atom_names ( ) const
inline

Definition at line 83 of file EnzdesLoopsFile.hh.

References loopres_base_atom_names_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::lt_dih ( ) const

Definition at line 136 of file EnzdesLoopsFile.cc.

References lt_dih_.

core::Size protocols::toolbox::match_enzdes_util::ResInteractions::num_interactions ( ) const
inline

Definition at line 92 of file EnzdesLoopsFile.hh.

References num_interactions_.

bool protocols::toolbox::match_enzdes_util::ResInteractions::process_input_line_tokens ( utility::vector1< std::string > const &  tokens)
protected

Definition at line 140 of file EnzdesLoopsFile.cc.

References dis_, loop_ang_, loop_dih_, loopres_atom_names_, loopres_base2_atom_names_, loopres_base_atom_names_, lt_dih_, num_interactions_, targ_ang_, targ_atom_names_, targ_base2_atom_names_, targ_base_atom_names_, targ_dih_, targ_res_, and protocols::toolbox::match_enzdes_util::tr().

Referenced by read_data(), and protocols::toolbox::match_enzdes_util::CstResInteractions::read_data().

bool protocols::toolbox::match_enzdes_util::ResInteractions::read_data ( utility::io::izstream &  data)
virtual

returns false if the file fails to specify the target residue number

Reimplemented in protocols::toolbox::match_enzdes_util::CstResInteractions.

Definition at line 60 of file EnzdesLoopsFile.cc.

References process_input_line_tokens(), core::io::pdb::split(), targ_res_, and protocols::toolbox::match_enzdes_util::tr().

void protocols::toolbox::match_enzdes_util::ResInteractions::set_loopres_atom_names ( utility::vector1< std::string > const &  l_atom_names)
inlineprotected

Definition at line 128 of file EnzdesLoopsFile.hh.

References loopres_atom_names_.

void protocols::toolbox::match_enzdes_util::ResInteractions::set_targ_atom_names ( utility::vector1< std::string > const &  t_atom_names)
inlineprotected

Definition at line 124 of file EnzdesLoopsFile.hh.

References targ_atom_names_.

void protocols::toolbox::match_enzdes_util::ResInteractions::set_targ_res ( core::Size  targ_res)
inlineprotected

Definition at line 120 of file EnzdesLoopsFile.hh.

References targ_res(), and targ_res_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::targ_ang ( ) const

Definition at line 124 of file EnzdesLoopsFile.cc.

References targ_ang_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::targ_atom_names ( ) const
inline

Definition at line 67 of file EnzdesLoopsFile.hh.

References targ_atom_names_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::targ_base2_atom_names ( ) const
inline

Definition at line 75 of file EnzdesLoopsFile.hh.

References targ_base2_atom_names_.

utility::vector1< std::string > const& protocols::toolbox::match_enzdes_util::ResInteractions::targ_base_atom_names ( ) const
inline

Definition at line 71 of file EnzdesLoopsFile.hh.

References targ_base_atom_names_.

toolbox::match_enzdes_util::GeomSampleInfoCOP protocols::toolbox::match_enzdes_util::ResInteractions::targ_dih ( ) const

Definition at line 132 of file EnzdesLoopsFile.cc.

References targ_dih_.

core::Size protocols::toolbox::match_enzdes_util::ResInteractions::targ_res ( ) const
inline

Definition at line 63 of file EnzdesLoopsFile.hh.

References targ_res_.

Referenced by protocols::toolbox::match_enzdes_util::CstResInteractions::read_data(), and set_targ_res().

void protocols::toolbox::match_enzdes_util::ResInteractions::write_data ( ) const
virtual

Reimplemented in protocols::toolbox::match_enzdes_util::CstResInteractions.

Definition at line 98 of file EnzdesLoopsFile.cc.

References loopres_atom_names_, num_interactions_, targ_atom_names_, targ_res_, and protocols::toolbox::match_enzdes_util::tr().

Referenced by protocols::toolbox::match_enzdes_util::CstResInteractions::write_data().

Member Data Documentation

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::dis_
private

Definition at line 138 of file EnzdesLoopsFile.hh.

Referenced by dis(), and process_input_line_tokens().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::loop_ang_
private

Definition at line 138 of file EnzdesLoopsFile.hh.

Referenced by loop_ang(), and process_input_line_tokens().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::loop_dih_
private

Definition at line 138 of file EnzdesLoopsFile.hh.

Referenced by loop_dih(), and process_input_line_tokens().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::loopres_atom_names_
private

Definition at line 140 of file EnzdesLoopsFile.hh.

Referenced by loopres_atom_names(), process_input_line_tokens(), ResInteractions(), set_loopres_atom_names(), and write_data().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::loopres_base2_atom_names_
private

Definition at line 142 of file EnzdesLoopsFile.hh.

Referenced by loopres_base2_atom_names(), and process_input_line_tokens().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::loopres_base_atom_names_
private

Definition at line 141 of file EnzdesLoopsFile.hh.

Referenced by loopres_base_atom_names(), and process_input_line_tokens().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::lt_dih_
private

Definition at line 138 of file EnzdesLoopsFile.hh.

Referenced by lt_dih(), and process_input_line_tokens().

core::Size protocols::toolbox::match_enzdes_util::ResInteractions::num_interactions_
private

Definition at line 136 of file EnzdesLoopsFile.hh.

Referenced by num_interactions(), process_input_line_tokens(), and write_data().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::targ_ang_
private

Definition at line 138 of file EnzdesLoopsFile.hh.

Referenced by process_input_line_tokens(), and targ_ang().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::targ_atom_names_
private

Definition at line 133 of file EnzdesLoopsFile.hh.

Referenced by process_input_line_tokens(), ResInteractions(), set_targ_atom_names(), targ_atom_names(), and write_data().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::targ_base2_atom_names_
private

Definition at line 135 of file EnzdesLoopsFile.hh.

Referenced by process_input_line_tokens(), and targ_base2_atom_names().

utility::vector1< std::string > protocols::toolbox::match_enzdes_util::ResInteractions::targ_base_atom_names_
private

Definition at line 134 of file EnzdesLoopsFile.hh.

Referenced by process_input_line_tokens(), and targ_base_atom_names().

toolbox::match_enzdes_util::GeomSampleInfoOP protocols::toolbox::match_enzdes_util::ResInteractions::targ_dih_
private

Definition at line 138 of file EnzdesLoopsFile.hh.

Referenced by process_input_line_tokens(), and targ_dih().

core::Size protocols::toolbox::match_enzdes_util::ResInteractions::targ_res_
private

Definition at line 132 of file EnzdesLoopsFile.hh.

Referenced by process_input_line_tokens(), read_data(), set_targ_res(), targ_res(), and write_data().

The documentation for this class was generated from the following files:
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