protocols::frag_picker::PhiPsiTalosIO Class Reference

#include <PhiPsiTalosIO.hh>

Collaboration diagram for protocols::frag_picker::PhiPsiTalosIO:

Public Member Functions
	PhiPsiTalosIO ()
	PhiPsiTalosIO (std::string file_name)
Size	get_first_residue_id () const
Size	get_last_residue_id () const
std::string const &	get_sequence () const
bool	has_entry (Size residue_id) const
const boost::tuple< Size, char, Real, Real, Real, Real, Real, Real, Size, std::string >	get_entry (const Size res_id)
Real	phi (Size res_id)
Real	psi (Size res_id)
Real	d_phi (Size res_id)
Real	d_psi (Size res_id)
Real	dist (Size res_id)
Real	s2 (Size res_id)
std::string	quality (Size res_id)
void	write (std::ostream &)
void	read (std::string const &)

Private Member Functions
void	print_sequence (std::string const &, std::ostream &) const

Private Attributes
std::string	data_format_
std::string	sequence_
utility::vector1< std::string >	column_names_
Size	first_residue_index_
Size	last_residue_index_
std::map< Size, boost::tuple < Size, char, Real, Real, Real, Real, Real, Real, Size, std::string > >	entries_

Detailed Description

Definition at line 35 of file PhiPsiTalosIO.hh.

Constructor & Destructor Documentation

protocols::frag_picker::PhiPsiTalosIO::PhiPsiTalosIO ( )

inline

Definition at line 38 of file PhiPsiTalosIO.hh.

protocols::frag_picker::PhiPsiTalosIO::PhiPsiTalosIO ( std::string  file_name)

inline

Definition at line 42 of file PhiPsiTalosIO.hh.

Member Function Documentation

Real protocols::frag_picker::PhiPsiTalosIO::d_phi ( Size  res_id)

inline

Definition at line 81 of file PhiPsiTalosIO.hh.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

Real protocols::frag_picker::PhiPsiTalosIO::d_psi ( Size  res_id)

inline

Definition at line 85 of file PhiPsiTalosIO.hh.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

Real protocols::frag_picker::PhiPsiTalosIO::dist ( Size  res_id)

inline

Definition at line 89 of file PhiPsiTalosIO.hh.

Referenced by read().

const boost::tuple<Size, char, Real, Real, Real, Real, Real, Real, Size, std::string> protocols::frag_picker::PhiPsiTalosIO::get_entry ( const Size  res_id)

inline

Definition at line 70 of file PhiPsiTalosIO.hh.

Referenced by protocols::frag_picker::scores::PhiPsiRmsd::PhiPsiRmsd().

Size protocols::frag_picker::PhiPsiTalosIO::get_first_residue_id ( ) const

inline

Definition at line 47 of file PhiPsiTalosIO.hh.

Size protocols::frag_picker::PhiPsiTalosIO::get_last_residue_id ( ) const

inline

Definition at line 51 of file PhiPsiTalosIO.hh.

std::string const& protocols::frag_picker::PhiPsiTalosIO::get_sequence ( ) const

inline

Definition at line 57 of file PhiPsiTalosIO.hh.

Referenced by protocols::frag_picker::scores::PhiPsiRmsd::PhiPsiRmsd(), and protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell().

bool protocols::frag_picker::PhiPsiTalosIO::has_entry ( Size  residue_id) const

inline

Definition at line 63 of file PhiPsiTalosIO.hh.

Referenced by protocols::frag_picker::scores::PhiPsiRmsd::PhiPsiRmsd(), protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

Real protocols::frag_picker::PhiPsiTalosIO::phi ( Size  res_id)

inline

Definition at line 73 of file PhiPsiTalosIO.hh.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

void protocols::frag_picker::PhiPsiTalosIO::print_sequence ( std::string const &  , std::ostream &    ) const

private

Real protocols::frag_picker::PhiPsiTalosIO::psi ( Size  res_id)

inline

Definition at line 77 of file PhiPsiTalosIO.hh.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

std::string protocols::frag_picker::PhiPsiTalosIO::quality ( Size  res_id)

inline

Definition at line 97 of file PhiPsiTalosIO.hh.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell().

void protocols::frag_picker::PhiPsiTalosIO::read

(

std::string const &

file_name)

Definition at line 44 of file PhiPsiTalosIO.cc.

References d_phi(), d_psi(), data_format_, dist(), entries_, first_residue_index_, has_entry(), last_residue_index_, phi(), psi(), s2(), sequence_, core::scoring::hbonds::t(), and protocols::frag_picker::tr().

Real protocols::frag_picker::PhiPsiTalosIO::s2 ( Size  res_id)

inline

Definition at line 93 of file PhiPsiTalosIO.hh.

Referenced by read().

void protocols::frag_picker::PhiPsiTalosIO::write

(

std::ostream &

out)

Definition at line 146 of file PhiPsiTalosIO.cc.

References column_names_, data_format_, entries_, first_residue_index_, and sequence_.

Referenced by protocols::frag_picker::scores::MakePhiPsiRmsd::make(), and protocols::frag_picker::scores::MakePhiPsiSquareWell::make().

Member Data Documentation

utility::vector1<std::string> protocols::frag_picker::PhiPsiTalosIO::column_names_

private

Definition at line 107 of file PhiPsiTalosIO.hh.

Referenced by write().

std::string protocols::frag_picker::PhiPsiTalosIO::data_format_

private

Definition at line 105 of file PhiPsiTalosIO.hh.

Referenced by read(), and write().

std::map<Size, boost::tuple<Size, char, Real, Real, Real, Real, Real, Real, Size, std::string> > protocols::frag_picker::PhiPsiTalosIO::entries_

private

Definition at line 111 of file PhiPsiTalosIO.hh.

Referenced by read(), and write().

Size protocols::frag_picker::PhiPsiTalosIO::first_residue_index_

private

Definition at line 108 of file PhiPsiTalosIO.hh.

Referenced by read(), and write().

Size protocols::frag_picker::PhiPsiTalosIO::last_residue_index_

private

Definition at line 109 of file PhiPsiTalosIO.hh.

Referenced by read().

std::string protocols::frag_picker::PhiPsiTalosIO::sequence_

private

Definition at line 106 of file PhiPsiTalosIO.hh.

Referenced by read(), and write().

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/PhiPsiTalosIO.hh
• src/protocols/frag_picker/PhiPsiTalosIO.cc