AA.hh File Reference

#include <ostream>

Go to the source code of this file.

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::chemical

Constant Groups
	core
	A class for defining atom parameters, known as atom_types.
	core::chemical

Enumerations
enum	core::chemical::AA {   core::chemical::aa_ala = 1, core::chemical::aa_cys, core::chemical::aa_asp, core::chemical::aa_glu,   core::chemical::aa_phe, core::chemical::aa_gly, core::chemical::aa_his, core::chemical::aa_ile,   core::chemical::aa_lys, core::chemical::aa_leu, core::chemical::aa_met, core::chemical::aa_asn,   core::chemical::aa_pro, core::chemical::aa_gln, core::chemical::aa_arg, core::chemical::aa_ser,   core::chemical::aa_thr, core::chemical::aa_val, core::chemical::aa_trp, core::chemical::aa_tyr,   core::chemical::num_canonical_aas = aa_tyr, core::chemical::na_ade, core::chemical::first_DNA_aa = na_ade, core::chemical::na_cyt,   core::chemical::na_gua, core::chemical::na_thy, core::chemical::last_DNA_aa = na_thy, core::chemical::na_rgu,   core::chemical::na_rad, core::chemical::na_rcy, core::chemical::na_ura, core::chemical::aa_vrt,   core::chemical::aa_unk, core::chemical::num_aa_types = aa_unk }
	enumeration for amino acids and nucleotides types with the total number as num_aa_types More...

Functions
AA	core::chemical::aa_from_name (std::string const &name)
	give a AA string name and return its enum type More...
std::string	core::chemical::name_from_aa (AA aa)
	give a enum type and return the string name More...
char	core::chemical::oneletter_code_from_aa (AA aa)
	give a enum type and return the string name More...
AA	core::chemical::aa_from_oneletter_code (char onelettercode)
	give a 1 letter code and return the string name More...
bool	core::chemical::oneletter_code_specifies_aa (char onelettercode)
std::istream &	core::chemical::operator>> (std::istream &is, AA &aa)
	input operator for AA enum type More...
std::ostream &	core::chemical::operator<< (std::ostream &os, AA const &aa)
	output operator for AA enum type More...

Detailed Description

Author

Phil Bradley

Definition in file AA.hh.