#include <RmsdFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::RmsdFilter:

Collaboration diagram for protocols::protein_interface_design::filters::RmsdFilter:

Public Member Functions
	RmsdFilter ()

	RmsdFilter (std::list< core::Size > const selection, bool const superimpose, core::Real const threshold, core::pose::PoseOP reference_pose)

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

protocols::filters::FilterOP	clone () const

protocols::filters::FilterOP	fresh_instance () const

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

virtual	~RmsdFilter ()

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &data_map, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &reference_pose)

void	superimpose_on_all (bool const b)

bool	superimpose_on_all () const

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
std::list< core::Size >	selection_

bool	superimpose_

bool	symmetry_

core::Real	threshold_

core::pose::PoseOP	reference_pose_

bool	selection_from_segment_cache_

bool	superimpose_on_all_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 31 of file RmsdFilter.hh.

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::RmsdFilter::RmsdFilter ( )

Definition at line 51 of file RmsdFilter.cc.

References selection_.

Referenced by clone(), protocols::protein_interface_design::filters::RmsdFilterCreator::create_filter(), and fresh_instance().

protocols::protein_interface_design::filters::RmsdFilter::RmsdFilter	(	std::list< core::Size > const	selection,
		bool const	superimpose,
		core::Real const	threshold,
		core::pose::PoseOP	reference_pose
	)

Definition at line 63 of file RmsdFilter.cc.

protocols::protein_interface_design::filters::RmsdFilter::~RmsdFilter ( )

virtual

Definition at line 77 of file RmsdFilter.cc.

Member Function Documentation

bool protocols::protein_interface_design::filters::RmsdFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 128 of file RmsdFilter.cc.

References compute(), threshold_, and protocols::protein_interface_design::filters::TR().

protocols::filters::FilterOP protocols::protein_interface_design::filters::RmsdFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 80 of file RmsdFilter.cc.

References RmsdFilter().

core::Real protocols::protein_interface_design::filters::RmsdFilter::compute ( core::pose::Pose const & pose) const

Definition at line 86 of file RmsdFilter.cc.

References core::scoring::calpha_superimpose_pose(), core::scoring::is_protein_CA(), reference_pose_, core::scoring::rmsd_no_super_subset(), core::scoring::rmsd_with_super_subset(), selection_, selection_from_segment_cache_, core::pose::datacache::SpecialSegmentsObserver::set_farray_from_sso(), superimpose_, superimpose_on_all(), core::scoring::sym_rmsd_with_super_subset(), symmetry_, and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::RmsdFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 43 of file RmsdFilter.hh.

References RmsdFilter().

void protocols::protein_interface_design::filters::RmsdFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data_map,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &	reference_pose
	)