| apply(pose::Pose &pose) | protocols::swa::rna::RNA_AnalyticLoopCloser | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| apply_solutions(pose::Pose &pose) | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| atom_ids_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| b_ang_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| b_len_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| chainbreak_suite_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| choose_best_solution_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| choose_best_solution_based_on_score_function(scoring::ScoreFunctionOP scorefxn) | protocols::swa::rna::RNA_AnalyticLoopCloser | |
| choose_least_perturb_solution() | protocols::swa::rna::RNA_AnalyticLoopCloser | |
| choose_least_perturb_solution_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| choose_random_solution_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::swa::rna::RNA_AnalyticLoopCloser | virtual |
| close_at_cutpoint(pose::Pose &pose) | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| create() | protocols::moves::Mover | virtual |
| dof_ids_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| figure_out_dof_ids_and_offsets(pose::Pose const &pose, utility::vector1< Real > const &dt_ang) | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| figure_out_offset(pose::Pose const &pose, id::DOF_ID const &dof_id, Real const &original_torsion_value, utility::vector1< Real > &offset_save) | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| fill_chainTORS(pose::Pose const &pose, utility::vector1< id::NamedAtomID > const &atom_ids, utility::vector1< utility::vector1< Real > > &atoms, utility::vector1< Real > &dt_ang, utility::vector1< Real > &db_ang, utility::vector1< Real > &db_len) const | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| fill_solution(pose::Pose &pose, Size const n) const | protocols::swa::rna::RNA_AnalyticLoopCloser | |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_all_solutions(pose::Pose &pose, utility::vector1< pose::PoseOP > &pose_list) | protocols::swa::rna::RNA_AnalyticLoopCloser | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::swa::rna::RNA_AnalyticLoopCloser | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_torsions(Size const n) | protocols::swa::rna::RNA_AnalyticLoopCloser | |
| get_torsions_for_all_solutions() | protocols::swa::rna::RNA_AnalyticLoopCloser | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| moving_suite_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| name() | protocols::moves::Mover | inlinestatic |
| nsol() | protocols::swa::rna::RNA_AnalyticLoopCloser | inline |
| nsol_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| offset_save_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| output_chainTORS(utility::vector1< Real > const &dt_ang, utility::vector1< Real > const &db_ang, utility::vector1< Real > const &db_len) const | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| RNA_AnalyticLoopCloser(Size const moving_suite, Size const chainbreak_suite) | protocols::swa::rna::RNA_AnalyticLoopCloser | |
| save_all_solutions_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| t_ang_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| TagPtr typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| verbose_ | protocols::swa::rna::RNA_AnalyticLoopCloser | private |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.4