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TrieCountPairNone.hh
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3 //
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9 
10 /// @file core/scoring/etable/etrie/TrieCountPairNone.hh
11 /// @brief
12 /// @author Andrew Leaver-Fay (aleaverfay@gmail.com)
13 
14 #ifndef INCLUDED_core_scoring_etable_etrie_TrieCountPairNone_hh
15 #define INCLUDED_core_scoring_etable_etrie_TrieCountPairNone_hh
16 
17 // Unit Headers
18 #include <core/scoring/etable/etrie/TrieCountPairNone.fwd.hh>
19 
20 // Package Headers
21 #include <core/scoring/etable/etrie/CountPairData_1_1.fwd.hh>
22 #include <core/scoring/etable/etrie/CountPairData_1_2.fwd.hh>
23 #include <core/scoring/etable/etrie/CountPairData_1_3.fwd.hh>
24 #include <core/scoring/etable/etrie/CountPairDataGeneric.fwd.hh>
25 
26 #include <core/scoring/hackelec/ElecAtom.fwd.hh>
27 #include <core/scoring/hackelec/HackElecEnergy.fwd.hh>
28 #include <core/scoring/hbonds/HBondEnergy.fwd.hh>
29 #include <core/scoring/hbonds/hbtrie/HBCPData.fwd.hh>
30 
31 #include <core/scoring/trie/TrieCountPairBase.hh>
32 #include <core/scoring/trie/RotamerTrie.fwd.hh>
33 
34 // AUTO-REMOVED #include <core/scoring/etable/count_pair/CountPairCrossover3.hh>
35 #include <core/scoring/etable/EtableEnergy.fwd.hh>
36 #include <core/scoring/etable/etrie/EtableAtom.fwd.hh>
37 
38 //XRW_B_T1
39 //#include <core/scoring/etable/CoarseEtableEnergy.fwd.hh>
40 //XRW_E_T1
41 #include <core/scoring/methods/MMLJEnergyInter.fwd.hh>
42 
43 // Project Headers
44 #include <core/types.hh>
45 
46 // Objexx FCL Headers
47 #include <ObjexxFCL/FArray2D.fwd.hh>
48 
49 namespace core {
50 namespace scoring {
51 namespace etable {
52 namespace etrie {
53 
54 class TrieCountPairNone : public trie::TrieCountPairBase
55 {
56 public:
57 
58  ///------------ Useful Functions ------------------///
59  template < class CPDATA1, class CPDATA2 >
60  bool operator () ( CPDATA1 const & /*at1dat*/, CPDATA2 const & /*at2dat*/, Real & /*weight*/, Size & /*path_dist*/ )
61  {
62  return false;
63  //Size const path_dist( at1dat.conn_dist() + at2dat.conn_dist() + 1 );
64  //std::cout << "trie_cp1bc3 " << at1dat.conn_dist() << " " << at2dat.conn_dist() << std::endl;
65  //return count_pair::CountPairCrossover3::count_at_path_distance( path_dist, weight );
66  }
67 
68  static
69  void
70  print();
71 
72 
73  ///---------- TYPE RESOLUTION FUNCTIONS ----------///
74  virtual
75  void
76  resolve_trie_vs_trie(
77  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
78  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
79  etable::TableLookupEvaluator const & sfxn,
80  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
81  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
82 
83  virtual
84  void
85  resolve_trie_vs_trie(
86  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
87  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
88  etable::TableLookupEvaluator const & sfxn,
89  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
90  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
91 
92  virtual
93  void
94  resolve_trie_vs_trie(
95  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
96  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
97  etable::TableLookupEvaluator const & sfxn,
98  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
99  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
100 
101  virtual
102  void
103  resolve_trie_vs_trie(
104  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
105  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
106  etable::TableLookupEvaluator const & sfxn,
107  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
108  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
109 
110  virtual
111  void
112  resolve_trie_vs_trie(
113  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
114  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
115  etable::TableLookupEvaluator const & sfxn,
116  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
117  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
118 
119  virtual
120  void
121  resolve_trie_vs_trie(
122  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
123  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
124  etable::TableLookupEvaluator const & sfxn,
125  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
126  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
127 
128  virtual
129  void
130  resolve_trie_vs_trie(
131  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
132  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
133  etable::TableLookupEvaluator const & sfxn,
134  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
135  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
136 
137  virtual
138  void
139  resolve_trie_vs_trie(
140  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
141  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
142  etable::TableLookupEvaluator const & sfxn,
143  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
144  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
145 
146  virtual
147  void
148  resolve_trie_vs_trie(
149  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
150  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
151  etable::TableLookupEvaluator const & sfxn,
152  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
153  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
154 
155  virtual
156  void
157  resolve_trie_vs_trie(
158  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
159  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
160  etable::TableLookupEvaluator const & sfxn,
161  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
162  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
163 
164  virtual
165  void
166  resolve_trie_vs_trie(
167  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
168  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
169  etable::TableLookupEvaluator const & sfxn,
170  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
171  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
172 
173  virtual
174  void
175  resolve_trie_vs_trie(
176  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
177  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
178  etable::TableLookupEvaluator const & sfxn,
179  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
180  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
181 
182  virtual
183  void
184  resolve_trie_vs_trie(
185  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
186  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
187  etable::TableLookupEvaluator const & sfxn,
188  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
189  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
190 
191  virtual
192  void
193  resolve_trie_vs_trie(
194  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
195  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
196  etable::TableLookupEvaluator const & sfxn,
197  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
198  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
199 
200  virtual
201  void
202  resolve_trie_vs_trie(
203  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
204  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
205  etable::TableLookupEvaluator const & sfxn,
206  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
207  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
208 
209  virtual
210  void
211  resolve_trie_vs_trie(
212  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
213  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
214  etable::TableLookupEvaluator const & sfxn,
215  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
216  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
217 
218  virtual
219  void
220  resolve_trie_vs_path(
221  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
222  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
223  etable::TableLookupEvaluator const & sfxn,
224  utility::vector1< core::PackerEnergy > & pair_energy_vector,
225  utility::vector1< core::PackerEnergy > & temp_vector);
226 
227  virtual
228  void
229  resolve_trie_vs_path(
230  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
231  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
232  etable::TableLookupEvaluator const & sfxn,
233  utility::vector1< core::PackerEnergy > & pair_energy_vector,
234  utility::vector1< core::PackerEnergy > & temp_vector);
235 
236  virtual
237  void
238  resolve_trie_vs_path(
239  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
240  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
241  etable::TableLookupEvaluator const & sfxn,
242  utility::vector1< core::PackerEnergy > & pair_energy_vector,
243  utility::vector1< core::PackerEnergy > & temp_vector);
244 
245  virtual
246  void
247  resolve_trie_vs_path(
248  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
249  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
250  etable::TableLookupEvaluator const & sfxn,
251  utility::vector1< core::PackerEnergy > & pair_energy_vector,
252  utility::vector1< core::PackerEnergy > & temp_vector);
253 
254  virtual
255  void
256  resolve_trie_vs_path(
257  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
258  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
259  etable::TableLookupEvaluator const & sfxn,
260  utility::vector1< core::PackerEnergy > & pair_energy_vector,
261  utility::vector1< core::PackerEnergy > & temp_vector);
262 
263  virtual
264  void
265  resolve_trie_vs_path(
266  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
267  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
268  etable::TableLookupEvaluator const & sfxn,
269  utility::vector1< core::PackerEnergy > & pair_energy_vector,
270  utility::vector1< core::PackerEnergy > & temp_vector);
271 
272  virtual
273  void
274  resolve_trie_vs_path(
275  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
276  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
277  etable::TableLookupEvaluator const & sfxn,
278  utility::vector1< core::PackerEnergy > & pair_energy_vector,
279  utility::vector1< core::PackerEnergy > & temp_vector);
280 
281  virtual
282  void
283  resolve_trie_vs_path(
284  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
285  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
286  etable::TableLookupEvaluator const & sfxn,
287  utility::vector1< core::PackerEnergy > & pair_energy_vector,
288  utility::vector1< core::PackerEnergy > & temp_vector);
289 
290  virtual
291  void
292  resolve_trie_vs_path(
293  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
294  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
295  etable::TableLookupEvaluator const & sfxn,
296  utility::vector1< core::PackerEnergy > & pair_energy_vector,
297  utility::vector1< core::PackerEnergy > & temp_vector);
298 
299  virtual
300  void
301  resolve_trie_vs_path(
302  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
303  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
304  etable::TableLookupEvaluator const & sfxn,
305  utility::vector1< core::PackerEnergy > & pair_energy_vector,
306  utility::vector1< core::PackerEnergy > & temp_vector);
307 
308  virtual
309  void
310  resolve_trie_vs_path(
311  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
312  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
313  etable::TableLookupEvaluator const & sfxn,
314  utility::vector1< core::PackerEnergy > & pair_energy_vector,
315  utility::vector1< core::PackerEnergy > & temp_vector);
316 
317  virtual
318  void
319  resolve_trie_vs_path(
320  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
321  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
322  etable::TableLookupEvaluator const & sfxn,
323  utility::vector1< core::PackerEnergy > & pair_energy_vector,
324  utility::vector1< core::PackerEnergy > & temp_vector);
325 
326  virtual
327  void
328  resolve_trie_vs_path(
329  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
330  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
331  etable::TableLookupEvaluator const & sfxn,
332  utility::vector1< core::PackerEnergy > & pair_energy_vector,
333  utility::vector1< core::PackerEnergy > & temp_vector);
334 
335  virtual
336  void
337  resolve_trie_vs_path(
338  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
339  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
340  etable::TableLookupEvaluator const & sfxn,
341  utility::vector1< core::PackerEnergy > & pair_energy_vector,
342  utility::vector1< core::PackerEnergy > & temp_vector);
343 
344  virtual
345  void
346  resolve_trie_vs_path(
347  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
348  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
349  etable::TableLookupEvaluator const & sfxn,
350  utility::vector1< core::PackerEnergy > & pair_energy_vector,
351  utility::vector1< core::PackerEnergy > & temp_vector);
352 
353  virtual
354  void
355  resolve_trie_vs_path(
356  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
357  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
358  etable::TableLookupEvaluator const & sfxn,
359  utility::vector1< core::PackerEnergy > & pair_energy_vector,
360  utility::vector1< core::PackerEnergy > & temp_vector);
361 
362 
363  //////////////////////////////////// EtableEnergy -- analytic evaluation /////////////////////////////////
364 
365  virtual
366  void
367  resolve_trie_vs_trie(
368  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
369  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
370  etable::AnalyticEtableEvaluator const & sfxn,
371  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
372  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
373 
374  virtual
375  void
376  resolve_trie_vs_trie(
377  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
378  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
379  etable::AnalyticEtableEvaluator const & sfxn,
380  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
381  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
382 
383  virtual
384  void
385  resolve_trie_vs_trie(
386  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
387  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
388  etable::AnalyticEtableEvaluator const & sfxn,
389  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
390  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
391 
392  virtual
393  void
394  resolve_trie_vs_trie(
395  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
396  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
397  etable::AnalyticEtableEvaluator const & sfxn,
398  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
399  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
400 
401  virtual
402  void
403  resolve_trie_vs_trie(
404  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
405  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
406  etable::AnalyticEtableEvaluator const & sfxn,
407  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
408  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
409 
410  virtual
411  void
412  resolve_trie_vs_trie(
413  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
414  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
415  etable::AnalyticEtableEvaluator const & sfxn,
416  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
417  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
418 
419  virtual
420  void
421  resolve_trie_vs_trie(
422  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
423  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
424  etable::AnalyticEtableEvaluator const & sfxn,
425  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
426  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
427 
428  virtual
429  void
430  resolve_trie_vs_trie(
431  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
432  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
433  etable::AnalyticEtableEvaluator const & sfxn,
434  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
435  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
436 
437  virtual
438  void
439  resolve_trie_vs_trie(
440  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
441  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
442  etable::AnalyticEtableEvaluator const & sfxn,
443  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
444  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
445 
446  virtual
447  void
448  resolve_trie_vs_trie(
449  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
450  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
451  etable::AnalyticEtableEvaluator const & sfxn,
452  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
453  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
454 
455  virtual
456  void
457  resolve_trie_vs_trie(
458  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
459  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
460  etable::AnalyticEtableEvaluator const & sfxn,
461  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
462  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
463 
464  virtual
465  void
466  resolve_trie_vs_trie(
467  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
468  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
469  etable::AnalyticEtableEvaluator const & sfxn,
470  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
471  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
472 
473  virtual
474  void
475  resolve_trie_vs_trie(
476  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
477  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
478  etable::AnalyticEtableEvaluator const & sfxn,
479  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
480  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
481 
482  virtual
483  void
484  resolve_trie_vs_trie(
485  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
486  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
487  etable::AnalyticEtableEvaluator const & sfxn,
488  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
489  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
490 
491  virtual
492  void
493  resolve_trie_vs_trie(
494  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
495  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
496  etable::AnalyticEtableEvaluator const & sfxn,
497  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
498  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
499 
500  virtual
501  void
502  resolve_trie_vs_trie(
503  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
504  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
505  etable::AnalyticEtableEvaluator const & sfxn,
506  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
507  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
508 
509  virtual
510  void
511  resolve_trie_vs_path(
512  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
513  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
514  etable::AnalyticEtableEvaluator const & sfxn,
515  utility::vector1< core::PackerEnergy > & pair_energy_vector,
516  utility::vector1< core::PackerEnergy > & temp_vector);
517 
518  virtual
519  void
520  resolve_trie_vs_path(
521  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
522  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
523  etable::AnalyticEtableEvaluator const & sfxn,
524  utility::vector1< core::PackerEnergy > & pair_energy_vector,
525  utility::vector1< core::PackerEnergy > & temp_vector);
526 
527  virtual
528  void
529  resolve_trie_vs_path(
530  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
531  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
532  etable::AnalyticEtableEvaluator const & sfxn,
533  utility::vector1< core::PackerEnergy > & pair_energy_vector,
534  utility::vector1< core::PackerEnergy > & temp_vector);
535 
536  virtual
537  void
538  resolve_trie_vs_path(
539  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
540  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
541  etable::AnalyticEtableEvaluator const & sfxn,
542  utility::vector1< core::PackerEnergy > & pair_energy_vector,
543  utility::vector1< core::PackerEnergy > & temp_vector);
544 
545  virtual
546  void
547  resolve_trie_vs_path(
548  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
549  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
550  etable::AnalyticEtableEvaluator const & sfxn,
551  utility::vector1< core::PackerEnergy > & pair_energy_vector,
552  utility::vector1< core::PackerEnergy > & temp_vector);
553 
554  virtual
555  void
556  resolve_trie_vs_path(
557  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
558  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
559  etable::AnalyticEtableEvaluator const & sfxn,
560  utility::vector1< core::PackerEnergy > & pair_energy_vector,
561  utility::vector1< core::PackerEnergy > & temp_vector);
562 
563  virtual
564  void
565  resolve_trie_vs_path(
566  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
567  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
568  etable::AnalyticEtableEvaluator const & sfxn,
569  utility::vector1< core::PackerEnergy > & pair_energy_vector,
570  utility::vector1< core::PackerEnergy > & temp_vector);
571 
572  virtual
573  void
574  resolve_trie_vs_path(
575  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
576  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
577  etable::AnalyticEtableEvaluator const & sfxn,
578  utility::vector1< core::PackerEnergy > & pair_energy_vector,
579  utility::vector1< core::PackerEnergy > & temp_vector);
580 
581  virtual
582  void
583  resolve_trie_vs_path(
584  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
585  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
586  etable::AnalyticEtableEvaluator const & sfxn,
587  utility::vector1< core::PackerEnergy > & pair_energy_vector,
588  utility::vector1< core::PackerEnergy > & temp_vector);
589 
590  virtual
591  void
592  resolve_trie_vs_path(
593  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
594  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
595  etable::AnalyticEtableEvaluator const & sfxn,
596  utility::vector1< core::PackerEnergy > & pair_energy_vector,
597  utility::vector1< core::PackerEnergy > & temp_vector);
598 
599  virtual
600  void
601  resolve_trie_vs_path(
602  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
603  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
604  etable::AnalyticEtableEvaluator const & sfxn,
605  utility::vector1< core::PackerEnergy > & pair_energy_vector,
606  utility::vector1< core::PackerEnergy > & temp_vector);
607 
608  virtual
609  void
610  resolve_trie_vs_path(
611  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
612  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
613  etable::AnalyticEtableEvaluator const & sfxn,
614  utility::vector1< core::PackerEnergy > & pair_energy_vector,
615  utility::vector1< core::PackerEnergy > & temp_vector);
616 
617  virtual
618  void
619  resolve_trie_vs_path(
620  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
621  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
622  etable::AnalyticEtableEvaluator const & sfxn,
623  utility::vector1< core::PackerEnergy > & pair_energy_vector,
624  utility::vector1< core::PackerEnergy > & temp_vector);
625 
626  virtual
627  void
628  resolve_trie_vs_path(
629  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
630  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
631  etable::AnalyticEtableEvaluator const & sfxn,
632  utility::vector1< core::PackerEnergy > & pair_energy_vector,
633  utility::vector1< core::PackerEnergy > & temp_vector);
634 
635  virtual
636  void
637  resolve_trie_vs_path(
638  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
639  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
640  etable::AnalyticEtableEvaluator const & sfxn,
641  utility::vector1< core::PackerEnergy > & pair_energy_vector,
642  utility::vector1< core::PackerEnergy > & temp_vector);
643 
644  virtual
645  void
646  resolve_trie_vs_path(
647  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
648  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
649  etable::AnalyticEtableEvaluator const & sfxn,
650  utility::vector1< core::PackerEnergy > & pair_energy_vector,
651  utility::vector1< core::PackerEnergy > & temp_vector);
652 
653 
654  // HBONDS
655  virtual
656  void
657  resolve_trie_vs_trie(
658  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
659  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
660  hbonds::HBondEnergy const & sfxn,
661  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
662  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
663 
664 
665  virtual
666  void
667  resolve_trie_vs_path(
668  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
669  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
670  hbonds::HBondEnergy const & sfxn,
671  utility::vector1< core::PackerEnergy > & pair_energy_vector,
672  utility::vector1< core::PackerEnergy > & temp_vector);
673 
674 /// Hack Elec Energy
675 
676  virtual
677  void
678  resolve_trie_vs_trie(
679  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
680  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
681  hackelec::HackElecEnergy const & sfxn,
682  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
683  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
684 
685  virtual
686  void
687  resolve_trie_vs_trie(
688  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
689  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
690  hackelec::HackElecEnergy const & sfxn,
691  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
692  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
693 
694  virtual
695  void
696  resolve_trie_vs_trie(
697  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
698  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
699  hackelec::HackElecEnergy const & sfxn,
700  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
701  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
702 
703  virtual
704  void
705  resolve_trie_vs_trie(
706  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
707  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
708  hackelec::HackElecEnergy const & sfxn,
709  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
710  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
711 
712  virtual
713  void
714  resolve_trie_vs_trie(
715  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
716  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
717  hackelec::HackElecEnergy const & sfxn,
718  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
719  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
720 
721  virtual
722  void
723  resolve_trie_vs_trie(
724  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
725  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
726  hackelec::HackElecEnergy const & sfxn,
727  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
728  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
729 
730  virtual
731  void
732  resolve_trie_vs_trie(
733  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
734  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
735  hackelec::HackElecEnergy const & sfxn,
736  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
737  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
738 
739  virtual
740  void
741  resolve_trie_vs_trie(
742  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
743  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
744  hackelec::HackElecEnergy const & sfxn,
745  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
746  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
747 
748  virtual
749  void
750  resolve_trie_vs_trie(
751  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
752  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
753  hackelec::HackElecEnergy const & sfxn,
754  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
755  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
756 
757  virtual
758  void
759  resolve_trie_vs_trie(
760  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
761  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
762  hackelec::HackElecEnergy const & sfxn,
763  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
764  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
765 
766  virtual
767  void
768  resolve_trie_vs_trie(
769  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
770  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
771  hackelec::HackElecEnergy const & sfxn,
772  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
773  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
774 
775  virtual
776  void
777  resolve_trie_vs_trie(
778  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
779  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
780  hackelec::HackElecEnergy const & sfxn,
781  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
782  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
783 
784  virtual
785  void
786  resolve_trie_vs_trie(
787  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
788  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
789  hackelec::HackElecEnergy const & sfxn,
790  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
791  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
792 
793  virtual
794  void
795  resolve_trie_vs_trie(
796  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
797  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
798  hackelec::HackElecEnergy const & sfxn,
799  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
800  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
801 
802  virtual
803  void
804  resolve_trie_vs_trie(
805  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
806  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
807  hackelec::HackElecEnergy const & sfxn,
808  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
809  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
810 
811  virtual
812  void
813  resolve_trie_vs_trie(
814  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
815  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
816  hackelec::HackElecEnergy const & sfxn,
817  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
818  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
819 
820  virtual
821  void
822  resolve_trie_vs_path(
823  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
824  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
825  hackelec::HackElecEnergy const & sfxn,
826  utility::vector1< core::PackerEnergy > & pair_energy_vector,
827  utility::vector1< core::PackerEnergy > & temp_vector);
828 
829  virtual
830  void
831  resolve_trie_vs_path(
832  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
833  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
834  hackelec::HackElecEnergy const & sfxn,
835  utility::vector1< core::PackerEnergy > & pair_energy_vector,
836  utility::vector1< core::PackerEnergy > & temp_vector);
837 
838  virtual
839  void
840  resolve_trie_vs_path(
841  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
842  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
843  hackelec::HackElecEnergy const & sfxn,
844  utility::vector1< core::PackerEnergy > & pair_energy_vector,
845  utility::vector1< core::PackerEnergy > & temp_vector);
846 
847  virtual
848  void
849  resolve_trie_vs_path(
850  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
851  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
852  hackelec::HackElecEnergy const & sfxn,
853  utility::vector1< core::PackerEnergy > & pair_energy_vector,
854  utility::vector1< core::PackerEnergy > & temp_vector);
855 
856  virtual
857  void
858  resolve_trie_vs_path(
859  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
860  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
861  hackelec::HackElecEnergy const & sfxn,
862  utility::vector1< core::PackerEnergy > & pair_energy_vector,
863  utility::vector1< core::PackerEnergy > & temp_vector);
864 
865  virtual
866  void
867  resolve_trie_vs_path(
868  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
869  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
870  hackelec::HackElecEnergy const & sfxn,
871  utility::vector1< core::PackerEnergy > & pair_energy_vector,
872  utility::vector1< core::PackerEnergy > & temp_vector);
873 
874  virtual
875  void
876  resolve_trie_vs_path(
877  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
878  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
879  hackelec::HackElecEnergy const & sfxn,
880  utility::vector1< core::PackerEnergy > & pair_energy_vector,
881  utility::vector1< core::PackerEnergy > & temp_vector);
882 
883  virtual
884  void
885  resolve_trie_vs_path(
886  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
887  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
888  hackelec::HackElecEnergy const & sfxn,
889  utility::vector1< core::PackerEnergy > & pair_energy_vector,
890  utility::vector1< core::PackerEnergy > & temp_vector);
891 
892  virtual
893  void
894  resolve_trie_vs_path(
895  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
896  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
897  hackelec::HackElecEnergy const & sfxn,
898  utility::vector1< core::PackerEnergy > & pair_energy_vector,
899  utility::vector1< core::PackerEnergy > & temp_vector);
900 
901  virtual
902  void
903  resolve_trie_vs_path(
904  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
905  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
906  hackelec::HackElecEnergy const & sfxn,
907  utility::vector1< core::PackerEnergy > & pair_energy_vector,
908  utility::vector1< core::PackerEnergy > & temp_vector);
909 
910  virtual
911  void
912  resolve_trie_vs_path(
913  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
914  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
915  hackelec::HackElecEnergy const & sfxn,
916  utility::vector1< core::PackerEnergy > & pair_energy_vector,
917  utility::vector1< core::PackerEnergy > & temp_vector);
918 
919  virtual
920  void
921  resolve_trie_vs_path(
922  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
923  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
924  hackelec::HackElecEnergy const & sfxn,
925  utility::vector1< core::PackerEnergy > & pair_energy_vector,
926  utility::vector1< core::PackerEnergy > & temp_vector);
927 
928  virtual
929  void
930  resolve_trie_vs_path(
931  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
932  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
933  hackelec::HackElecEnergy const & sfxn,
934  utility::vector1< core::PackerEnergy > & pair_energy_vector,
935  utility::vector1< core::PackerEnergy > & temp_vector);
936 
937  virtual
938  void
939  resolve_trie_vs_path(
940  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
941  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
942  hackelec::HackElecEnergy const & sfxn,
943  utility::vector1< core::PackerEnergy > & pair_energy_vector,
944  utility::vector1< core::PackerEnergy > & temp_vector);
945 
946  virtual
947  void
948  resolve_trie_vs_path(
949  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
950  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
951  hackelec::HackElecEnergy const & sfxn,
952  utility::vector1< core::PackerEnergy > & pair_energy_vector,
953  utility::vector1< core::PackerEnergy > & temp_vector);
954 
955  virtual
956  void
957  resolve_trie_vs_path(
958  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
959  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
960  hackelec::HackElecEnergy const & sfxn,
961  utility::vector1< core::PackerEnergy > & pair_energy_vector,
962  utility::vector1< core::PackerEnergy > & temp_vector);
963 
964  /////////////////////////// MMLJEnergyInter //////////////////////////////
965  virtual
966  void
967  resolve_trie_vs_trie(
968  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
969  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
970  methods::MMLJEnergyInter const & sfxn,
971  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
972  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
973 
974  virtual
975  void
976  resolve_trie_vs_trie(
977  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
978  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
979  methods::MMLJEnergyInter const & sfxn,
980  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
981  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
982 
983  virtual
984  void
985  resolve_trie_vs_trie(
986  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
987  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
988  methods::MMLJEnergyInter const & sfxn,
989  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
990  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
991 
992  virtual
993  void
994  resolve_trie_vs_trie(
995  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
996  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
997  methods::MMLJEnergyInter const & sfxn,
998  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
999  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1000 
1001  virtual
1002  void
1003  resolve_trie_vs_trie(
1004  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1005  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1006  methods::MMLJEnergyInter const & sfxn,
1007  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1008  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1009 
1010  virtual
1011  void
1012  resolve_trie_vs_trie(
1013  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1014  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1015  methods::MMLJEnergyInter const & sfxn,
1016  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1017  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1018 
1019  virtual
1020  void
1021  resolve_trie_vs_trie(
1022  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1023  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1024  methods::MMLJEnergyInter const & sfxn,
1025  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1026  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1027 
1028  virtual
1029  void
1030  resolve_trie_vs_trie(
1031  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1032  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1033  methods::MMLJEnergyInter const & sfxn,
1034  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1035  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1036 
1037  virtual
1038  void
1039  resolve_trie_vs_trie(
1040  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1041  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1042  methods::MMLJEnergyInter const & sfxn,
1043  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1044  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1045 
1046  virtual
1047  void
1048  resolve_trie_vs_trie(
1049  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1050  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1051  methods::MMLJEnergyInter const & sfxn,
1052  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1053  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1054 
1055  virtual
1056  void
1057  resolve_trie_vs_trie(
1058  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1059  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1060  methods::MMLJEnergyInter const & sfxn,
1061  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1062  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1063 
1064  virtual
1065  void
1066  resolve_trie_vs_trie(
1067  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1068  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1069  methods::MMLJEnergyInter const & sfxn,
1070  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1071  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1072 
1073  virtual
1074  void
1075  resolve_trie_vs_trie(
1076  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1077  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1078  methods::MMLJEnergyInter const & sfxn,
1079  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1080  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1081 
1082  virtual
1083  void
1084  resolve_trie_vs_trie(
1085  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1086  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1087  methods::MMLJEnergyInter const & sfxn,
1088  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1089  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1090 
1091  virtual
1092  void
1093  resolve_trie_vs_trie(
1094  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1095  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1096  methods::MMLJEnergyInter const & sfxn,
1097  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1098  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1099 
1100  virtual
1101  void
1102  resolve_trie_vs_trie(
1103  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1104  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1105  methods::MMLJEnergyInter const & sfxn,
1106  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1107  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1108 
1109  virtual
1110  void
1111  resolve_trie_vs_path(
1112  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1113  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1114  methods::MMLJEnergyInter const & sfxn,
1115  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1116  utility::vector1< core::PackerEnergy > & temp_vector);
1117 
1118  virtual
1119  void
1120  resolve_trie_vs_path(
1121  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1122  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1123  methods::MMLJEnergyInter const & sfxn,
1124  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1125  utility::vector1< core::PackerEnergy > & temp_vector);
1126 
1127  virtual
1128  void
1129  resolve_trie_vs_path(
1130  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1131  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1132  methods::MMLJEnergyInter const & sfxn,
1133  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1134  utility::vector1< core::PackerEnergy > & temp_vector);
1135 
1136  virtual
1137  void
1138  resolve_trie_vs_path(
1139  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1140  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1141  methods::MMLJEnergyInter const & sfxn,
1142  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1143  utility::vector1< core::PackerEnergy > & temp_vector);
1144 
1145  virtual
1146  void
1147  resolve_trie_vs_path(
1148  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1149  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1150  methods::MMLJEnergyInter const & sfxn,
1151  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1152  utility::vector1< core::PackerEnergy > & temp_vector);
1153 
1154  virtual
1155  void
1156  resolve_trie_vs_path(
1157  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1158  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1159  methods::MMLJEnergyInter const & sfxn,
1160  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1161  utility::vector1< core::PackerEnergy > & temp_vector);
1162 
1163  virtual
1164  void
1165  resolve_trie_vs_path(
1166  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1167  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1168  methods::MMLJEnergyInter const & sfxn,
1169  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1170  utility::vector1< core::PackerEnergy > & temp_vector);
1171 
1172  virtual
1173  void
1174  resolve_trie_vs_path(
1175  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1176  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1177  methods::MMLJEnergyInter const & sfxn,
1178  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1179  utility::vector1< core::PackerEnergy > & temp_vector);
1180 
1181  virtual
1182  void
1183  resolve_trie_vs_path(
1184  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1185  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1186  methods::MMLJEnergyInter const & sfxn,
1187  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1188  utility::vector1< core::PackerEnergy > & temp_vector);
1189 
1190  virtual
1191  void
1192  resolve_trie_vs_path(
1193  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1194  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1195  methods::MMLJEnergyInter const & sfxn,
1196  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1197  utility::vector1< core::PackerEnergy > & temp_vector);
1198 
1199  virtual
1200  void
1201  resolve_trie_vs_path(
1202  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1203  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1204  methods::MMLJEnergyInter const & sfxn,
1205  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1206  utility::vector1< core::PackerEnergy > & temp_vector);
1207 
1208  virtual
1209  void
1210  resolve_trie_vs_path(
1211  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1212  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1213  methods::MMLJEnergyInter const & sfxn,
1214  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1215  utility::vector1< core::PackerEnergy > & temp_vector);
1216 
1217  virtual
1218  void
1219  resolve_trie_vs_path(
1220  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1221  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1222  methods::MMLJEnergyInter const & sfxn,
1223  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1224  utility::vector1< core::PackerEnergy > & temp_vector);
1225 
1226  virtual
1227  void
1228  resolve_trie_vs_path(
1229  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1230  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1231  methods::MMLJEnergyInter const & sfxn,
1232  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1233  utility::vector1< core::PackerEnergy > & temp_vector);
1234 
1235  virtual
1236  void
1237  resolve_trie_vs_path(
1238  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1239  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1240  methods::MMLJEnergyInter const & sfxn,
1241  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1242  utility::vector1< core::PackerEnergy > & temp_vector);
1243 
1244  virtual
1245  void
1246  resolve_trie_vs_path(
1247  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1248  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1249  methods::MMLJEnergyInter const & sfxn,
1250  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1251  utility::vector1< core::PackerEnergy > & temp_vector);
1252 
1253 };
1254 
1255 
1256 
1257 } // namespace etrie
1258 } // namespace etable
1259 } // namespace scoring
1260 } // namespace core
1261 
1262 #endif
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