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protocols::relax::ClassicRelax Member List

This is the complete list of members for protocols::relax::ClassicRelax, including all inherited members.

apply(core::pose::Pose &pose)protocols::relax::ClassicRelaxvirtual
protocols::relax::RelaxProtocolBase::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
apply_disulfides(core::pose::Pose &pose)protocols::relax::RelaxProtocolBase
cartesian(bool newval)protocols::relax::RelaxProtocolBaseinline
cartesian() const protocols::relax::RelaxProtocolBaseinline
cartesian_protocols::relax::RelaxProtocolBaseprotected
check_default_full_repacker(core::pose::Pose &pose, core::kinematics::MoveMap &movemap)protocols::relax::ClassicRelaxprivate
check_default_mc(core::pose::Pose &pose)protocols::relax::ClassicRelaxprivate
check_default_rottrial(core::pose::Pose &pose, core::kinematics::MoveMap &movemap)protocols::relax::ClassicRelaxprivate
checkpoints_protocols::relax::ClassicRelaxprivate
ClassicRelax(core::scoring::ScoreFunctionOP scorefxn_in)protocols::relax::ClassicRelax
ClassicRelax(core::scoring::ScoreFunctionOP scorefxn_in, core::kinematics::MoveMapOP movemap)protocols::relax::ClassicRelax
ClassicRelax(ClassicRelax const &)protocols::relax::ClassicRelax
ClassicRelax()protocols::relax::ClassicRelax
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::relax::ClassicRelaxvirtual
constrain_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_coords(bool constrain_coords)protocols::relax::RelaxProtocolBaseinline
constrain_coords_protocols::relax::RelaxProtocolBaseprotected
constrain_relax_segments() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_segments(bool constrain_relax_segments)protocols::relax::RelaxProtocolBaseinline
constrain_relax_segments_protocols::relax::RelaxProtocolBaseprotected
constrain_relax_to_native_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_native_coords(bool constrain_relax_to_native_coords)protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_native_coords_protocols::relax::RelaxProtocolBaseprotected
constrain_relax_to_start_coords() const protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_start_coords(bool constrain_relax_to_start_coords)protocols::relax::RelaxProtocolBaseinline
constrain_relax_to_start_coords_protocols::relax::RelaxProtocolBaseprotected
coord_constrain_sidechains_protocols::relax::RelaxProtocolBaseprotected
create()protocols::moves::Movervirtual
dry_run() const protocols::relax::RelaxProtocolBaseinline
end_rep_weightprotocols::relax::ClassicRelaxprivate
energycutprotocols::relax::ClassicRelaxprivate
explicit_ramp_constraints() const protocols::relax::RelaxProtocolBaseinline
explicit_ramp_constraints_protocols::relax::RelaxProtocolBaseprotected
filter_stage2_beginningprotocols::relax::ClassicRelaxprivate
filter_stage2_endprotocols::relax::ClassicRelaxprivate
filter_stage2_halfprotocols::relax::ClassicRelaxprivate
filter_stage2_quarterprotocols::relax::ClassicRelaxprivate
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::relax::RelaxProtocolBaseinlinevirtual
get_additional_output()protocols::moves::Movervirtual
get_checkpoints()protocols::relax::ClassicRelaxinline
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_mc(core::pose::Pose &pose)protocols::relax::ClassicRelax
get_movemap()protocols::relax::RelaxProtocolBase
get_name() const protocols::relax::ClassicRelaxvirtual
get_native_pose() const protocols::moves::Mover
get_scorefxn() const protocols::relax::RelaxProtocolBase
get_scorefxn()protocols::relax::RelaxProtocolBaseprotected
get_task_factory() const protocols::relax::RelaxProtocolBase
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize_movemap(core::pose::Pose const &pose, core::kinematics::MoveMap &movemap)protocols::relax::RelaxProtocolBaseprotected
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
limit_aroma_chi2() const protocols::relax::RelaxProtocolBaseinline
limit_aroma_chi2_protocols::relax::RelaxProtocolBaseprotected
lj_ramp_cyclesprotocols::relax::ClassicRelaxprivate
lj_ramp_inner_cyclesprotocols::relax::ClassicRelaxprivate
m_Temperatureprotocols::relax::ClassicRelaxprivate
mc_protocols::relax::ClassicRelaxprivate
min_mover_protocols::relax::ClassicRelaxprivate
min_toleranceprotocols::relax::ClassicRelaxprivate
min_typeprotocols::relax::ClassicRelaxprivate
min_type_protocols::relax::RelaxProtocolBaseprotected
minimize_bond_angles(bool setting)protocols::relax::RelaxProtocolBase
minimize_bond_angles() const protocols::relax::RelaxProtocolBase
minimize_bond_lengths(bool setting)protocols::relax::RelaxProtocolBase
minimize_bond_lengths() const protocols::relax::RelaxProtocolBase
minimize_bondangle_subset(int setting)protocols::relax::RelaxProtocolBase
minimize_bondangle_subset() const protocols::relax::RelaxProtocolBase
minimize_bondlength_subset(int setting)protocols::relax::RelaxProtocolBase
minimize_bondlength_subset() const protocols::relax::RelaxProtocolBase
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
moveset_phase1_protocols::relax::ClassicRelaxprivate
moveset_phase2_protocols::relax::ClassicRelaxprivate
moveset_phase3_protocols::relax::ClassicRelaxprivate
name()protocols::moves::Moverinlinestatic
nb_listprotocols::relax::ClassicRelaxprivate
nmoves_protocols::relax::ClassicRelaxprivate
operator=(Mover const &other)protocols::moves::Mover
output_debug_structure(core::pose::Pose &pose, std::string prefix)protocols::relax::RelaxProtocolBaseprotected
pack_full_repack_protocols::relax::ClassicRelaxprivate
pack_rottrial_protocols::relax::ClassicRelaxprivate
parent typedefprotocols::relax::ClassicRelax
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
ramp_down_constraints() const protocols::relax::RelaxProtocolBaseinline
ramp_down_constraints(bool ramp_down_constraints)protocols::relax::RelaxProtocolBaseinline
ramp_down_constraints_protocols::relax::RelaxProtocolBaseprotected
register_options()protocols::relax::ClassicRelaxstatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
RelaxProtocolBase(core::scoring::ScoreFunctionOP)protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername="RelaxProtocol")protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername, core::scoring::ScoreFunctionOP)protocols::relax::RelaxProtocolBase
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
score_stage2_beginningprotocols::relax::ClassicRelaxprivate
score_stage2_endprotocols::relax::ClassicRelaxprivate
score_stage2_halfprotocols::relax::ClassicRelaxprivate
score_stage2_quarterprotocols::relax::ClassicRelaxprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_default(core::scoring::ScoreFunctionOP scorefxn_in)protocols::relax::ClassicRelax
set_default(bool const use_default_movemap=true)protocols::relax::ClassicRelax
set_default_coordinate_settings()protocols::relax::RelaxProtocolBase
set_default_minimization_settings()protocols::relax::RelaxProtocolBase
set_default_minimizer()protocols::relax::ClassicRelax
set_default_movemap()protocols::relax::RelaxProtocolBase
set_default_moveset_phase1()protocols::relax::ClassicRelax
set_default_moveset_phase2()protocols::relax::ClassicRelax
set_default_moveset_phase3()protocols::relax::ClassicRelax
set_defaults()protocols::relax::RelaxProtocolBase
set_dry_run(bool setting)protocols::relax::RelaxProtocolBaseinline
set_full_repack(protocols::simple_moves::PackRotamersMoverOP new_pack_full_repack)protocols::relax::ClassicRelax
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_lj_ramp_cycles(int param)protocols::relax::ClassicRelaxinline
set_lj_ramp_inner_cycles(int param)protocols::relax::ClassicRelaxinline
set_mc(moves::MonteCarloOP new_mc_)protocols::relax::ClassicRelax
set_min_type(std::string min_type)protocols::relax::RelaxProtocolBase
set_movemap(core::kinematics::MoveMapOP movemap)protocols::relax::RelaxProtocolBase
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_rottrial(protocols::simple_moves::RotamerTrialsMoverOP new_pack_rottrial)protocols::relax::ClassicRelax
set_scorefxn(core::scoring::ScoreFunctionOP score)protocols::relax::RelaxProtocolBase
set_stage2_cycles(int cycles2)protocols::relax::ClassicRelaxinline
set_stage2_repack_period(int repack2)protocols::relax::ClassicRelaxinline
set_stage3_cycles(int cycles3)protocols::relax::ClassicRelaxinline
set_start_rep_weight(core::Real param)protocols::relax::ClassicRelaxinline
set_task_factory(core::pack::task::TaskFactoryOP taskf)protocols::relax::RelaxProtocolBase
set_tolerance(core::Real new_tolerance)protocols::relax::ClassicRelax
set_up_constraints(core::pose::Pose &pose, core::kinematics::MoveMap &local_movemap)protocols::relax::RelaxProtocolBaseprotected
setPoseExtraScores(core::pose::Pose &pose)protocols::relax::ClassicRelax
st_atr_protocols::relax::ClassicRelaxprivate
st_rep_protocols::relax::ClassicRelaxprivate
st_sol_protocols::relax::ClassicRelaxprivate
stage2_cyclesprotocols::relax::ClassicRelaxprivate
stage2_repack_periodprotocols::relax::ClassicRelaxprivate
stage3_cyclesprotocols::relax::ClassicRelaxprivate
start_rep_weightprotocols::relax::ClassicRelaxprivate
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
use_coarse_vdw()protocols::relax::ClassicRelaxinline
use_default_mc_protocols::relax::ClassicRelaxprivate
use_default_pack_full_repack_protocols::relax::ClassicRelaxprivate
use_default_pack_rottrial_protocols::relax::ClassicRelaxprivate
~ClassicRelax()protocols::relax::ClassicRelaxvirtual
~Mover()protocols::moves::Movervirtual
~RelaxProtocolBase()protocols::relax::RelaxProtocolBase
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