#include <HSSTripletFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::HSSTripletFilter:

Collaboration diagram for protocols::fldsgn::filters::HSSTripletFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef std::string	String

typedef core::Real	Real

typedef core::Size	Size

typedef protocols::filters::FilterOP	FilterOP

typedef core::pose::Pose	Pose

typedef protocols::fldsgn::topology::HSSTriplet	HSSTriplet

typedef protocols::fldsgn::topology::HSSTriplets	HSSTriplets

typedef protocols::fldsgn::topology::HSSTripletSet	HSSTripletSet

typedef protocols::fldsgn::topology::HSSTripletSetOP	HSSTripletSetOP

typedef utility::tag::TagPtr	TagPtr

typedef protocols::filters::Filters_map	Filters_map

typedef protocols::moves::DataMap	DataMap

typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	HSSTripletFilter ()

	HSSTripletFilter (HSSTriplets const &hss3s)

	HSSTripletFilter (String const &hss3s)

	HSSTripletFilter (HSSTripletFilter const &rval)

virtual	~HSSTripletFilter ()

virtual FilterOP	clone () const

virtual FilterOP	fresh_instance () const

void	add_hsstriplets (HSSTriplets const &hss3s)

void	secstruct (String const &ss)

void	filter_min_dist (Real const r)

void	filter_max_dist (Real const r)
	maximum distance for filtering More...

void	filter_min_angle (Real const r)
	miniimum angle for filtering More...

void	filter_max_angle (Real const r)
	maximum angle for filtering More...

void	output_id (Size const i)
	set output id More...

void	output_type (String const &s)
	set output type More...

virtual std::string	name () const

virtual void	parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...

Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...

Real	compute (Pose const &pose) const

virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
HSSTripletSetOP	hss3set_
	hsstriplet More...

String	secstruct_
	if value is empty, dssp will run for ss definition ( default is emptry ) More...

Real	filter_min_dist_
	filtered min distance between helix and sheet More...

Real	filter_max_dist_
	filtered max distance between helix and sheet More...

Real	filter_min_angle_
	filtered min angle between helix and sheet More...

Real	filter_max_angle_
	filtered max angle between helix and sheet More...

Size	output_id_
	output id of HSSTriplet More...

String	output_type_
	output type, dist or angle More...

Real	output_value_
	output value, the result of filterring calculation More...

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 46 of file HSSTripletFilter.hh.

Member Typedef Documentation

typedef protocols::moves::DataMap protocols::fldsgn::filters::HSSTripletFilter::DataMap

Definition at line 64 of file HSSTripletFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::HSSTripletFilter::Filter

Definition at line 51 of file HSSTripletFilter.hh.

typedef protocols::filters::FilterOP protocols::fldsgn::filters::HSSTripletFilter::FilterOP

Definition at line 55 of file HSSTripletFilter.hh.

typedef protocols::filters::Filters_map protocols::fldsgn::filters::HSSTripletFilter::Filters_map

Definition at line 63 of file HSSTripletFilter.hh.

typedef protocols::fldsgn::topology::HSSTriplet protocols::fldsgn::filters::HSSTripletFilter::HSSTriplet

Definition at line 57 of file HSSTripletFilter.hh.

typedef protocols::fldsgn::topology::HSSTriplets protocols::fldsgn::filters::HSSTripletFilter::HSSTriplets

Definition at line 58 of file HSSTripletFilter.hh.

typedef protocols::fldsgn::topology::HSSTripletSet protocols::fldsgn::filters::HSSTripletFilter::HSSTripletSet

Definition at line 59 of file HSSTripletFilter.hh.

typedef protocols::fldsgn::topology::HSSTripletSetOP protocols::fldsgn::filters::HSSTripletFilter::HSSTripletSetOP

Definition at line 60 of file HSSTripletFilter.hh.

typedef protocols::moves::Movers_map protocols::fldsgn::filters::HSSTripletFilter::Movers_map

Definition at line 65 of file HSSTripletFilter.hh.

typedef core::pose::Pose protocols::fldsgn::filters::HSSTripletFilter::Pose

Definition at line 56 of file HSSTripletFilter.hh.

typedef core::Real protocols::fldsgn::filters::HSSTripletFilter::Real

Definition at line 53 of file HSSTripletFilter.hh.

typedef core::Size protocols::fldsgn::filters::HSSTripletFilter::Size

Definition at line 54 of file HSSTripletFilter.hh.

typedef std::string protocols::fldsgn::filters::HSSTripletFilter::String

Definition at line 52 of file HSSTripletFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::HSSTripletFilter::Super

Definition at line 50 of file HSSTripletFilter.hh.

typedef utility::tag::TagPtr protocols::fldsgn::filters::HSSTripletFilter::TagPtr

Definition at line 62 of file HSSTripletFilter.hh.

Constructor & Destructor Documentation

protocols::fldsgn::filters::HSSTripletFilter::HSSTripletFilter ( )

Definition at line 47 of file HSSTripletFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::HSSTripletFilter::HSSTripletFilter ( HSSTriplets const & hss3s)

Definition at line 61 of file HSSTripletFilter.cc.

protocols::fldsgn::filters::HSSTripletFilter::HSSTripletFilter ( String const & hss3s)

Definition at line 75 of file HSSTripletFilter.cc.

protocols::fldsgn::filters::HSSTripletFilter::HSSTripletFilter ( HSSTripletFilter const & rval)

Definition at line 89 of file HSSTripletFilter.cc.

virtual protocols::fldsgn::filters::HSSTripletFilter::~HSSTripletFilter ( )

inlinevirtual

Definition at line 83 of file HSSTripletFilter.hh.

Member Function Documentation

void protocols::fldsgn::filters::HSSTripletFilter::add_hsstriplets ( HSSTriplets const & hss3s)

Definition at line 104 of file HSSTripletFilter.cc.

References hss3set_.

Referenced by parse_my_tag().

bool protocols::fldsgn::filters::HSSTripletFilter::apply ( Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 166 of file HSSTripletFilter.cc.

References filter_max_angle_, filter_max_dist_, filter_min_angle_, filter_min_dist_, hss3set_, output_id_, output_type_, output_value_, secstruct_, core::pose::Pose::total_residue(), and protocols::fldsgn::TR().

Referenced by compute().

virtual FilterOP protocols::fldsgn::filters::HSSTripletFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 90 of file HSSTripletFilter.hh.

References HSSTripletFilter().

HSSTripletFilter::Real protocols::fldsgn::filters::HSSTripletFilter::compute ( Pose const & pose) const

Definition at line 248 of file HSSTripletFilter.cc.

References apply(), and output_value_.

Referenced by report_sm().

void protocols::fldsgn::filters::HSSTripletFilter::filter_max_angle ( Real const r)

maximum angle for filtering

Definition at line 138 of file HSSTripletFilter.cc.

References filter_max_angle_.

void protocols::fldsgn::filters::HSSTripletFilter::filter_max_dist ( Real const r)

maximum distance for filtering

Definition at line 124 of file HSSTripletFilter.cc.

References filter_max_dist_.

void protocols::fldsgn::filters::HSSTripletFilter::filter_min_angle ( Real const r)

miniimum angle for filtering

Definition at line 131 of file HSSTripletFilter.cc.

References filter_min_angle_.

void protocols::fldsgn::filters::HSSTripletFilter::filter_min_dist ( Real const r)

Definition at line 117 of file HSSTripletFilter.cc.

References filter_min_dist_.

virtual FilterOP protocols::fldsgn::filters::HSSTripletFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 93 of file HSSTripletFilter.hh.

References HSSTripletFilter().

virtual std::string protocols::fldsgn::filters::HSSTripletFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Definition at line 128 of file HSSTripletFilter.hh.

void protocols::fldsgn::filters::HSSTripletFilter::output_id ( Size const i)

set output id

maximum angle for filtering

Definition at line 145 of file HSSTripletFilter.cc.

References output_id_.

void protocols::fldsgn::filters::HSSTripletFilter::output_type ( String const & s)

set output type

Definition at line 152 of file HSSTripletFilter.cc.

References output_type_.

void protocols::fldsgn::filters::HSSTripletFilter::parse_my_tag	(	TagPtr const	tag,
		DataMap &	,
		Filters_map const &	,
		Movers_map const &	,
		Pose const &
	)

virtual

parse xml

Reimplemented from protocols::filters::Filter.

Definition at line 256 of file HSSTripletFilter.cc.

References add_hsstriplets(), filter_max_angle_, filter_max_dist_, filter_min_angle_, filter_min_dist_, hss3set_, protocols::fldsgn::topology::HSSTripletSet::hss_triplets(), output_id_, output_type_, secstruct_, and protocols::fldsgn::TR().

HSSTripletFilter::Real protocols::fldsgn::filters::HSSTripletFilter::report_sm ( Pose const & ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 159 of file HSSTripletFilter.cc.

References compute().

void protocols::fldsgn::filters::HSSTripletFilter::secstruct ( String const & ss)

Definition at line 110 of file HSSTripletFilter.cc.

References secstruct_.

Member Data Documentation

Real protocols::fldsgn::filters::HSSTripletFilter::filter_max_angle_

private

filtered max angle between helix and sheet

Definition at line 175 of file HSSTripletFilter.hh.

Referenced by apply(), filter_max_angle(), and parse_my_tag().

Real protocols::fldsgn::filters::HSSTripletFilter::filter_max_dist_

private

filtered max distance between helix and sheet

Definition at line 169 of file HSSTripletFilter.hh.

Referenced by apply(), filter_max_dist(), and parse_my_tag().

Real protocols::fldsgn::filters::HSSTripletFilter::filter_min_angle_

private

filtered min angle between helix and sheet

Definition at line 172 of file HSSTripletFilter.hh.

Referenced by apply(), filter_min_angle(), and parse_my_tag().

Real protocols::fldsgn::filters::HSSTripletFilter::filter_min_dist_

private

filtered min distance between helix and sheet

Definition at line 166 of file HSSTripletFilter.hh.

Referenced by apply(), filter_min_dist(), and parse_my_tag().

HSSTripletSetOP protocols::fldsgn::filters::HSSTripletFilter::hss3set_

private

hsstriplet

Definition at line 160 of file HSSTripletFilter.hh.

Referenced by add_hsstriplets(), apply(), and parse_my_tag().

Size protocols::fldsgn::filters::HSSTripletFilter::output_id_

private

output id of HSSTriplet

Definition at line 178 of file HSSTripletFilter.hh.

Referenced by apply(), output_id(), and parse_my_tag().

String protocols::fldsgn::filters::HSSTripletFilter::output_type_

private

output type, dist or angle

Definition at line 181 of file HSSTripletFilter.hh.

Referenced by apply(), output_type(), and parse_my_tag().

Real protocols::fldsgn::filters::HSSTripletFilter::output_value_

mutableprivate

output value, the result of filterring calculation

Definition at line 184 of file HSSTripletFilter.hh.

Referenced by apply(), and compute().

String protocols::fldsgn::filters::HSSTripletFilter::secstruct_

mutableprivate

if value is empty, dssp will run for ss definition ( default is emptry )

Definition at line 163 of file HSSTripletFilter.hh.

Referenced by apply(), parse_my_tag(), and secstruct().

The documentation for this class was generated from the following files:

src/protocols/fldsgn/filters/HSSTripletFilter.hh
src/protocols/fldsgn/filters/HSSTripletFilter.cc

Public Types

Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation