protocols::abinitio::KinematicControl Class Reference

#include <KinematicControl.hh>

Inheritance diagram for protocols::abinitio::KinematicControl:

Collaboration diagram for protocols::abinitio::KinematicControl:

Public Member Functions
	KinematicControl ()
virtual	~KinematicControl ()
bool	prepare_pose_for_sampling (core::pose::Pose &pose) const
void	add_chainbreak_variants (core::pose::Pose &pose) const
void	add_chainbreak_variants (core::pose::Pose &pose, core::Size max_dist, core::kinematics::ShortestPathInFoldTree const &) const
core::kinematics::FoldTree const &	sampling_fold_tree () const
core::kinematics::FoldTree const &	final_fold_tree () const
void	set_sampling_fold_tree (core::kinematics::FoldTree const &f)
void	set_final_fold_tree (core::kinematics::FoldTree const &f)
void	set_movemap (core::kinematics::MoveMapCOP mm)
void	set_strict_movemap (core::kinematics::MoveMapCOP mm)
core::kinematics::MoveMapCOP	movemap_ptr () const
core::kinematics::MoveMap const &	movemap () const
simple_moves::FragmentMoverOP	jump_mover () const
void	set_jump_mover (simple_moves::FragmentMoverOP jm)
virtual void	add_score_weights (core::scoring::ScoreFunction &, core::Real) const

Private Attributes
core::kinematics::MoveMapCOP	strict_movemap_
core::kinematics::MoveMapCOP	movemap_
core::kinematics::FoldTree	sampling_fold_tree_
core::kinematics::FoldTree	final_fold_tree_
simple_moves::FragmentMoverOP	jump_mover_

Detailed Description

Definition at line 82 of file KinematicControl.hh.

Constructor & Destructor Documentation

protocols::abinitio::KinematicControl::KinematicControl

(

)

Definition at line 119 of file KinematicControl.cc.

protocols::abinitio::KinematicControl::~KinematicControl ( )

virtual

Definition at line 120 of file KinematicControl.cc.

Member Function Documentation

void protocols::abinitio::KinematicControl::add_chainbreak_variants

(

core::pose::Pose &

pose)

const

Definition at line 94 of file KinematicControl.cc.

References core::pose::add_variant_type_to_pose_residue(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, protocols::abinitio::find_sampling_cuts(), and core::pose::Pose::fold_tree().

Referenced by protocols::abinitio::KinematicAbinitio::set_max_seq_sep().

void protocols::abinitio::KinematicControl::add_chainbreak_variants	(	core::pose::Pose &	pose,
		core::Size	max_dist,
		core::kinematics::ShortestPathInFoldTree const &	sp
	)		const

Definition at line 105 of file KinematicControl.cc.

References core::pose::add_variant_type_to_pose_residue(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::kinematics::ShortestPathInFoldTree::dist(), protocols::abinitio::find_sampling_cuts(), core::pose::Pose::fold_tree(), and tr().

virtual void protocols::abinitio::KinematicControl::add_score_weights ( core::scoring::ScoreFunction &  , core::Real    ) const

inlinevirtual

Reimplemented in protocols::abinitio::CoordinateConstraintKC.

Definition at line 132 of file KinematicControl.hh.

Referenced by protocols::abinitio::KinematicAbinitio::replace_scorefxn().

core::kinematics::FoldTree const& protocols::abinitio::KinematicControl::final_fold_tree ( ) const

inline

Definition at line 102 of file KinematicControl.hh.

References final_fold_tree_.

simple_moves::FragmentMoverOP protocols::abinitio::KinematicControl::jump_mover

(

)

const

Definition at line 143 of file KinematicControl.cc.

Referenced by protocols::abinitio::KinematicAbinitio::create_jump_moves().

core::kinematics::MoveMap const & protocols::abinitio::KinematicControl::movemap

(

)

const

Definition at line 137 of file KinematicControl.cc.

core::kinematics::MoveMapCOP protocols::abinitio::KinematicControl::movemap_ptr

(

)

const

Definition at line 132 of file KinematicControl.cc.

bool protocols::abinitio::KinematicControl::prepare_pose_for_sampling

(

core::pose::Pose &

pose)

const

Definition at line 73 of file KinematicControl.cc.

References core::pose::Pose::fold_tree(), and protocols::jumping::safe_secstruct().

Referenced by protocols::abinitio::KinematicAbinitio::apply().

core::kinematics::FoldTree const& protocols::abinitio::KinematicControl::sampling_fold_tree ( ) const

inline

Definition at line 98 of file KinematicControl.hh.

References sampling_fold_tree_.

Referenced by protocols::abinitio::KinematicAbinitio::dump_jump_log().

void protocols::abinitio::KinematicControl::set_final_fold_tree ( core::kinematics::FoldTree const &  f)

inline

Definition at line 112 of file KinematicControl.hh.

References final_fold_tree_.

void protocols::abinitio::KinematicControl::set_jump_mover

(

simple_moves::FragmentMoverOP

jm)

Definition at line 149 of file KinematicControl.cc.

void protocols::abinitio::KinematicControl::set_movemap

(

core::kinematics::MoveMapCOP

mm)

Definition at line 122 of file KinematicControl.cc.

void protocols::abinitio::KinematicControl::set_sampling_fold_tree ( core::kinematics::FoldTree const &  f)

inline

Definition at line 106 of file KinematicControl.hh.

References sampling_fold_tree_.

Referenced by protocols::abinitio::JumpingFoldConstraintsWrapper::apply().

void protocols::abinitio::KinematicControl::set_strict_movemap

(

core::kinematics::MoveMapCOP

mm)

Definition at line 127 of file KinematicControl.cc.

Member Data Documentation

core::kinematics::FoldTree protocols::abinitio::KinematicControl::final_fold_tree_

private

Definition at line 147 of file KinematicControl.hh.

Referenced by final_fold_tree(), and set_final_fold_tree().

simple_moves::FragmentMoverOP protocols::abinitio::KinematicControl::jump_mover_

private

Definition at line 149 of file KinematicControl.hh.

core::kinematics::MoveMapCOP protocols::abinitio::KinematicControl::movemap_

private

Definition at line 144 of file KinematicControl.hh.

core::kinematics::FoldTree protocols::abinitio::KinematicControl::sampling_fold_tree_

private

Definition at line 146 of file KinematicControl.hh.

Referenced by sampling_fold_tree(), and set_sampling_fold_tree().

core::kinematics::MoveMapCOP protocols::abinitio::KinematicControl::strict_movemap_

private

Definition at line 132 of file KinematicControl.hh.

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The documentation for this class was generated from the following files:

• src/protocols/abinitio/KinematicControl.hh
• src/protocols/abinitio/KinematicControl.cc