protocols::protein_interface_design::FavorNonNativeResidue Class Reference

#include <design_utils.hh>

Collaboration diagram for protocols::protein_interface_design::FavorNonNativeResidue:

Public Types
typedef core::pose::Pose	Pose
typedef core::Real	Real

Public Member Functions
	FavorNonNativeResidue (Pose &pose, Real const native_residue_bonus)
	FavorNonNativeResidue (Pose &pose, utility::vector1< Real > const native_residue_bonus)
virtual	~FavorNonNativeResidue ()

Private Member Functions
void	add_residue_constraints (Pose &pose) const

Private Attributes
utility::vector1< Real >	non_native_residue_bonus_

Detailed Description

class FavorNonNativeResidue changes a pose object so that its residue identities at the initialization of FavorNonNativeResidue are kept in memory. If the res_type_constraint score term is set to a value other than 0, an energy bonus will be assigned if the residue changes. This is useful if we want to encourage mutation. A negative score would discourage mutation.

Definition at line 126 of file design_utils.hh.

Member Typedef Documentation

typedef core::pose::Pose protocols::protein_interface_design::FavorNonNativeResidue::Pose

Definition at line 129 of file design_utils.hh.

typedef core::Real protocols::protein_interface_design::FavorNonNativeResidue::Real

Definition at line 130 of file design_utils.hh.

Constructor & Destructor Documentation

FavorNonNativeResidue::FavorNonNativeResidue	(	Pose &	pose,
		core::Real const	non_native_residue_bonus
	)

Definition at line 313 of file design_utils.cc.

References core::pose::Pose::total_residue().

FavorNonNativeResidue::FavorNonNativeResidue	(	Pose &	pose,
		utility::vector1< Real > const	native_residue_bonus
	)

Definition at line 323 of file design_utils.cc.

References core::pose::Pose::total_residue().

virtual protocols::protein_interface_design::FavorNonNativeResidue::~FavorNonNativeResidue ( )

inlinevirtual

Definition at line 134 of file design_utils.hh.

Member Function Documentation

void FavorNonNativeResidue::add_residue_constraints ( pose::Pose &  pose) const

private

Definition at line 335 of file design_utils.cc.

References core::pose::Pose::add_constraint(), and core::pose::Pose::total_residue().

Member Data Documentation

utility::vector1< Real > protocols::protein_interface_design::FavorNonNativeResidue::non_native_residue_bonus_

private

Definition at line 137 of file design_utils.hh.

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/design_utils.hh
• src/protocols/protein_interface_design/design_utils.cc