protocols::match::RemoveNorCTermMPM Class Reference

added by olga and flo 1/2011 class to exclude positions at the n and c termini of proteins from matching More...

#include <MatchPositionModifiers.hh>

Inheritance diagram for protocols::match::RemoveNorCTermMPM:

Collaboration diagram for protocols::match::RemoveNorCTermMPM:

Public Member Functions
	RemoveNorCTermMPM (utility::vector1< std::string > const &input_tokens)
	~RemoveNorCTermMPM ()
virtual utility::vector1 < core::Size >	modified_match_positions (utility::vector1< core::Size > const &original_positions, core::pose::Pose const &match_pose, protocols::match::MatcherTaskCOP mtask) const
	the positions in the vector1< Size > that is returned by this function will replace the match positions in the MatcherTask. More...
Public Member Functions inherited from protocols::match::MatchPositionModifier
	MatchPositionModifier ()
virtual	~MatchPositionModifier ()

Private Attributes
core::Size	cterm_length_
core::Size	nterm_length_

Detailed Description

added by olga and flo 1/2011 class to exclude positions at the n and c termini of proteins from matching

Definition at line 189 of file MatchPositionModifiers.hh.

Constructor & Destructor Documentation

protocols::match::RemoveNorCTermMPM::RemoveNorCTermMPM

(

utility::vector1< std::string > const &

input_tokens)

Definition at line 365 of file MatchPositionModifiers.cc.

References cterm_length_, and nterm_length_.

protocols::match::RemoveNorCTermMPM::~RemoveNorCTermMPM

(

)

Definition at line 380 of file MatchPositionModifiers.cc.

Member Function Documentation

utility::vector1< core::Size > protocols::match::RemoveNorCTermMPM::modified_match_positions ( utility::vector1< core::Size > const &  original_positions, core::pose::Pose const &  match_pose, protocols::match::MatcherTaskCOP  mtask  ) const

virtual

the positions in the vector1< Size > that is returned by this function will replace the match positions in the MatcherTask.

Implements protocols::match::MatchPositionModifier.

Definition at line 383 of file MatchPositionModifiers.cc.

References cterm_length_, core::chemical::ResidueType::is_protein(), nterm_length_, core::pose::Pose::residue_type(), and core::pose::Pose::total_residue().

Member Data Documentation

core::Size protocols::match::RemoveNorCTermMPM::cterm_length_

private

Definition at line 207 of file MatchPositionModifiers.hh.

Referenced by modified_match_positions(), and RemoveNorCTermMPM().

core::Size protocols::match::RemoveNorCTermMPM::nterm_length_

private

Definition at line 207 of file MatchPositionModifiers.hh.

Referenced by modified_match_positions(), and RemoveNorCTermMPM().

---

The documentation for this class was generated from the following files:

• src/protocols/match/MatchPositionModifiers.hh
• src/protocols/match/MatchPositionModifiers.cc