protocols::rna::RNA_HelixAssembler Member List

This is the complete list of members for protocols::rna::RNA_HelixAssembler, including all inherited members.

ALPHA_A_FORM	protocols::rna::RNA_HelixAssembler	private
apply(core::pose::Pose &pose)	protocols::rna::RNA_HelixAssembler	virtual
apply(core::pose::Pose &pose, std::string const &sequence)	protocols::rna::RNA_HelixAssembler
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
BETA_A_FORM	protocols::rna::RNA_HelixAssembler	private
build_on_base_pair(core::pose::Pose &pose, Size const &n, char const &seq1, char const &seq2)	protocols::rna::RNA_HelixAssembler	private
CHI_A_FORM	protocols::rna::RNA_HelixAssembler	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::rna::RNA_HelixAssembler	virtual
create()	protocols::moves::Mover	virtual
DELTA_A_FORM	protocols::rna::RNA_HelixAssembler	private
EPSILON_A_FORM	protocols::rna::RNA_HelixAssembler	private
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::moves::Mover	virtual
GAMMA_A_FORM	protocols::rna::RNA_HelixAssembler	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::rna::RNA_HelixAssembler	virtual
get_native_pose() const	protocols::moves::Mover
get_rid_of_capping_base_pairs(core::pose::Pose &pose)	protocols::rna::RNA_HelixAssembler	private
get_type() const	protocols::moves::Mover	inline
ideal_coord_	protocols::rna::RNA_HelixAssembler	private
ideal_jump	protocols::rna::RNA_HelixAssembler	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
minimize_all_	protocols::rna::RNA_HelixAssembler	private
minimize_base_step(core::pose::Pose &pose, Size const n)	protocols::rna::RNA_HelixAssembler	private
model_and_remove_capping_residues_	protocols::rna::RNA_HelixAssembler	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
NU1_A_FORM	protocols::rna::RNA_HelixAssembler	private
NU2_A_FORM	protocols::rna::RNA_HelixAssembler	private
operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
perturb_amplitude_	protocols::rna::RNA_HelixAssembler	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
put_constraints_on_base_step(core::pose::Pose &pose, Size const &n)	protocols::rna::RNA_HelixAssembler	private
random_perturbation(bool const &setting)	protocols::rna::RNA_HelixAssembler	inline
random_perturbation_	protocols::rna::RNA_HelixAssembler	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
RNA_HelixAssembler()	protocols::rna::RNA_HelixAssembler
rsd_set	protocols::rna::RNA_HelixAssembler	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
scorefxn	protocols::rna::RNA_HelixAssembler	private
set_Aform_torsions(core::pose::Pose &pose, Size const &n)	protocols::rna::RNA_HelixAssembler	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_minimize_all(bool const &setting)	protocols::rna::RNA_HelixAssembler	inline
set_model_and_remove_capping_residues(bool setting)	protocols::rna::RNA_HelixAssembler	inline
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_scorefxn(core::scoring::ScoreFunctionOP setting)	protocols::rna::RNA_HelixAssembler
Strings typedef	protocols::moves::Mover
TagPtr typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
use_phenix_geo(bool const setting)	protocols::rna::RNA_HelixAssembler
use_phenix_geo_	protocols::rna::RNA_HelixAssembler	private
verbose_	protocols::rna::RNA_HelixAssembler	private
ZETA_A_FORM	protocols::rna::RNA_HelixAssembler	private
~Mover()	protocols::moves::Mover	virtual