| add(FrameOP aFrame) | core::fragment::FragSet | |
| add(FrameList const &frames) | core::fragment::FragSet | |
| add(FragSet const &frames) | core::fragment::FragSet | |
| add(FragID const &) | core::fragment::FragSet | |
| add(FragID_List &list) | core::fragment::FragSet | inline |
| add_(FrameOP) | core::fragment::FragSetCollection | protectedvirtual |
| add_fragset(FragSetOP fragset) | core::fragment::FragSetCollection | |
| begin() const | core::fragment::FragSetCollection | virtual |
| clone() const | core::fragment::FragSetCollection | virtual |
| empty() const | core::fragment::FragSetCollection | virtual |
| empty_clone() const | core::fragment::FragSetCollection | virtual |
| end() const | core::fragment::FragSetCollection | virtual |
| FragSet() | core::fragment::FragSet | inline |
| fragset_list_ | core::fragment::FragSetCollection | private |
| FragSetCollection() | core::fragment::FragSetCollection | |
| FragSetCollection(FragSetCollection const &) | core::fragment::FragSetCollection | |
| FragSetList typedef | core::fragment::FragSetCollection | private |
| frames(core::Size pos, FrameList &frames) const | core::fragment::FragSet | inlinevirtual |
| generate_insert_map(kinematics::MoveMap const &mm, InsertMap &insert_map, InsertSize &insert_size) const | core::fragment::FragSet | virtual |
| insert_fragID_list(FragID_List &list) | core::fragment::FragSet | |
| max_frag_length() const | core::fragment::FragSet | inline |
| max_pos() const | core::fragment::FragSet | inline |
| min_pos() const | core::fragment::FragSet | inline |
| nr_frames() const | core::fragment::FragSet | |
| Parent typedef | core::fragment::FragSetCollection | |
| region(kinematics::MoveMap const &move_map, Size start, Size end, Size min_overlap, Size min_length, FrameList &frames) const | core::fragment::FragSetCollection | virtual |
| region_all(core::Size start, core::Size end, core::Size min_overlap, core::Size min_length, FrameList &frames) const | core::fragment::FragSet | virtual |
| region_simple(core::Size start, core::Size end, FrameList &frames) const | core::fragment::FragSet | inlinevirtual |
| set_max_frag_length(Size setting) | core::fragment::FragSet | inlineprotected |
| set_max_pos(Size pos) | core::fragment::FragSet | inlineprotected |
| set_min_pos(Size pos) | core::fragment::FragSet | inlineprotected |
| size() const | core::fragment::FragSet | |
| ~FragSet() | core::fragment::FragSet | inlinevirtual |
| ~FragSetCollection() | core::fragment::FragSetCollection | |
1.8.4