core::pack::task::operation::DisallowIfNonnativeRLT Class Reference

#include <ResLvlTaskOperations.hh>

Inheritance diagram for core::pack::task::operation::DisallowIfNonnativeRLT:

Collaboration diagram for core::pack::task::operation::DisallowIfNonnativeRLT:

Public Types
typedef ResLvlTaskOperation	parent
Public Types inherited from core::pack::task::operation::ResLvlTaskOperation
typedef utility::tag::TagPtr	TagPtr

Public Member Functions
	DisallowIfNonnativeRLT ()
	DisallowIfNonnativeRLT (utility::vector1< bool > disallowed_aas)
virtual	~DisallowIfNonnativeRLT ()
virtual ResLvlTaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...
virtual void	apply (ResidueLevelTask &rlt) const
	Change a ResidueLevelTask in some way. The input pose is the one to which the input task will be later applied. More...
void	clear ()
void	disallow_aas (utility::vector1< bool > const &cannonical_disallowed)
void	disallow_aas (std::string const &aa_string)
virtual void	parse_tag (TagPtr)
	parser xml-like tags to set class data/parameters More...

Private Member Functions
utility::vector1< bool >	invert_vector (utility::vector1< bool > disallowed_aas)

Private Attributes
utility::vector1< bool >	disallowed_aas_
utility::vector1< bool >	allowed_aas_

Detailed Description

Definition at line 63 of file ResLvlTaskOperations.hh.

Member Typedef Documentation

typedef ResLvlTaskOperation core::pack::task::operation::DisallowIfNonnativeRLT::parent

Definition at line 66 of file ResLvlTaskOperations.hh.

Constructor & Destructor Documentation

core::pack::task::operation::DisallowIfNonnativeRLT::DisallowIfNonnativeRLT

(

)

Definition at line 100 of file ResLvlTaskOperations.cc.

Referenced by clone().

core::pack::task::operation::DisallowIfNonnativeRLT::DisallowIfNonnativeRLT

(

utility::vector1< bool >

disallowed_aas)

Definition at line 104 of file ResLvlTaskOperations.cc.

core::pack::task::operation::DisallowIfNonnativeRLT::~DisallowIfNonnativeRLT ( )

virtual

Definition at line 109 of file ResLvlTaskOperations.cc.

Member Function Documentation

void core::pack::task::operation::DisallowIfNonnativeRLT::apply ( ResidueLevelTask &  ) const

virtual

Change a ResidueLevelTask in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::ResLvlTaskOperation.

Definition at line 135 of file ResLvlTaskOperations.cc.

References allowed_aas_, core::chemical::num_canonical_aas, and core::pack::task::ResidueLevelTask::restrict_nonnative_canonical_aas().

void core::pack::task::operation::DisallowIfNonnativeRLT::clear

(

)

Definition at line 121 of file ResLvlTaskOperations.cc.

References allowed_aas_, and disallowed_aas_.

ResLvlTaskOperationOP core::pack::task::operation::DisallowIfNonnativeRLT::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::ResLvlTaskOperation.

Definition at line 116 of file ResLvlTaskOperations.cc.

References DisallowIfNonnativeRLT().

void core::pack::task::operation::DisallowIfNonnativeRLT::disallow_aas

(

utility::vector1< bool > const &

cannonical_disallowed)

Definition at line 141 of file ResLvlTaskOperations.cc.

References allowed_aas_, disallowed_aas_, invert_vector(), and core::chemical::num_canonical_aas.

Referenced by parse_tag().

void core::pack::task::operation::DisallowIfNonnativeRLT::disallow_aas

(

std::string const &

aa_string)

Definition at line 146 of file ResLvlTaskOperations.cc.

References core::chemical::aa_from_oneletter_code(), allowed_aas_, disallowed_aas_, core::sequence::end, invert_vector(), core::chemical::num_canonical_aas, and core::chemical::oneletter_code_specifies_aa().

utility::vector1< bool > core::pack::task::operation::DisallowIfNonnativeRLT::invert_vector ( utility::vector1< bool >  disallowed_aas)

private

Definition at line 127 of file ResLvlTaskOperations.cc.

References disallowed_aas_.

Referenced by disallow_aas().

void core::pack::task::operation::DisallowIfNonnativeRLT::parse_tag ( TagPtr  )

virtual

parser xml-like tags to set class data/parameters

Reimplemented from core::pack::task::operation::ResLvlTaskOperation.

Definition at line 163 of file ResLvlTaskOperations.cc.

References disallow_aas().

Member Data Documentation

utility::vector1< bool > core::pack::task::operation::DisallowIfNonnativeRLT::allowed_aas_

private

Definition at line 83 of file ResLvlTaskOperations.hh.

Referenced by apply(), clear(), and disallow_aas().

utility::vector1< bool > core::pack::task::operation::DisallowIfNonnativeRLT::disallowed_aas_

private

Definition at line 82 of file ResLvlTaskOperations.hh.

Referenced by clear(), disallow_aas(), and invert_vector().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/ResLvlTaskOperations.hh
• src/core/pack/task/operation/ResLvlTaskOperations.cc