#include <StubScoreFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::StubScoreFilter:

Collaboration diagram for protocols::protein_interface_design::filters::StubScoreFilter:

Public Member Functions
	StubScoreFilter ()
	default ctor More...

virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...

virtual void	report (std::ostream &out, core::pose::Pose const &pose) const

virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

virtual protocols::filters::FilterOP	clone () const

virtual protocols::filters::FilterOP	fresh_instance () const

core::Real	compute (core::pose::Pose const &pose) const

virtual	~StubScoreFilter ()

void	stub_sets (utility::vector1< StubSetStubPos > const &stub_sets)

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

	StubScoreFilter ()
	default ctor More...

virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...

virtual void	report (std::ostream &out, core::pose::Pose const &pose) const

virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

virtual protocols::filters::FilterOP	clone () const

virtual protocols::filters::FilterOP	fresh_instance () const

core::Real	compute (core::pose::Pose const &pose) const

virtual	~StubScoreFilter ()

void	stub_sets (utility::vector1< StubSetStubPos > const &stub_sets)

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

typedef std::pair < protocols::hotspot_hashing::HotspotStubSetOP, std::pair < protocols::hotspot_hashing::HotspotStubOP, core::Size > >	StubSetStubPos

typedef protocols::filters::Filter	parent

typedef std::pair < protocols::hotspot_hashing::HotspotStubSetOP, std::pair < protocols::hotspot_hashing::HotspotStubOP, core::Size > >	StubSetStubPos

Private Attributes
utility::vector1< StubSetStubPos >	stub_sets_

core::Size	host_chain_

core::Real	cb_force_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 38 of file StubScoreFilter.hh.

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::StubScoreFilter::parent

private

Definition at line 41 of file StubScoreFilter.hh.

typedef protocols::filters::Filter protocols::protein_interface_design::filters::StubScoreFilter::parent

private

Definition at line 41 of file StubScoreFilterLoops.hh.

typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > protocols::protein_interface_design::filters::StubScoreFilter::StubSetStubPos

private

Definition at line 42 of file StubScoreFilterLoops.hh.

typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > protocols::protein_interface_design::filters::StubScoreFilter::StubSetStubPos

private

Definition at line 42 of file StubScoreFilter.hh.

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter ( )

default ctor

Definition at line 50 of file StubScoreFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::StubScoreFilter::~StubScoreFilter ( )

virtual

Definition at line 125 of file StubScoreFilter.cc.

protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter ( )

default ctor

virtual protocols::protein_interface_design::filters::StubScoreFilter::~StubScoreFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::StubScoreFilter::apply ( core::pose::Pose const & pose) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

Definition at line 57 of file StubScoreFilter.cc.

References compute().

virtual bool protocols::protein_interface_design::filters::StubScoreFilter::apply ( core::pose::Pose const & pose) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 129 of file StubScoreFilter.cc.

References StubScoreFilter().

virtual protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute ( core::pose::Pose const & pose) const

Definition at line 68 of file StubScoreFilter.cc.

References core::scoring::backbone_stub_constraint, protocols::protein_interface_design::movers::PlacementMinimizationMover::cb_force(), cb_force_, protocols::simple_filters::ScoreTypeFilter::compute(), protocols::protein_interface_design::movers::PlacementMinimizationMover::host_chain(), host_chain_, protocols::protein_interface_design::movers::make_stub_scorefxn(), protocols::protein_interface_design::movers::PlacementMinimizationMover::refresh_bbstub_constraints(), protocols::hotspot_hashing::remove_hotspot_constraints_from_pose(), protocols::protein_interface_design::movers::PlacementMinimizationMover::stub_sets(), and stub_sets_.

Referenced by apply(), report(), and report_sm().

core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute ( core::pose::Pose const & pose) const

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 121 of file StubScoreFilter.cc.

References StubScoreFilter().

virtual protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

void protocols::protein_interface_design::filters::StubScoreFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)

virtual

Reimplemented from protocols::filters::Filter.

void protocols::protein_interface_design::filters::StubScoreFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &	pose
	)

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 106 of file StubScoreFilter.cc.

References cb_force_, host_chain_, protocols::protein_interface_design::movers::parse_stub_sets(), and stub_sets_.

void protocols::protein_interface_design::filters::StubScoreFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 95 of file StubScoreFilter.cc.

References compute().

virtual void protocols::protein_interface_design::filters::StubScoreFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

virtual

Reimplemented from protocols::filters::Filter.

virtual core::Real protocols::protein_interface_design::filters::StubScoreFilter::report_sm ( core::pose::Pose const & ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::StubScoreFilter::report_sm ( core::pose::Pose const & ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 89 of file StubScoreFilter.cc.

References compute().

void protocols::protein_interface_design::filters::StubScoreFilter::stub_sets ( utility::vector1< StubSetStubPos > const & stub_sets)

Member Data Documentation

core::Real protocols::protein_interface_design::filters::StubScoreFilter::cb_force_

private

Definition at line 63 of file StubScoreFilter.hh.

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::StubScoreFilter::host_chain_

private

Definition at line 62 of file StubScoreFilter.hh.

Referenced by compute(), and parse_my_tag().

utility::vector1< StubSetStubPos > protocols::protein_interface_design::filters::StubScoreFilter::stub_sets_

private

Definition at line 61 of file StubScoreFilter.hh.

Referenced by compute(), and parse_my_tag().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/StubScoreFilter.hh
src/protocols/protein_interface_design/filters/StubScoreFilterLoops.hh
src/protocols/protein_interface_design/filters/StubScoreFilter.cc

Public Member Functions

Private Types

Private Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation