BatchJobInputter.hh

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/// @file   protocols/jd2/BatchJobInputter.hh
/// @brief  header file for BatchJobInputter class
/// @author Oliver Lange


#ifndef INCLUDED_protocols_jd2_BatchJobInputter_hh
#define INCLUDED_protocols_jd2_BatchJobInputter_hh

//unit headers
#include <protocols/jd2/JobInputter.hh>
#include <protocols/jd2/BatchJobInputter.fwd.hh>
#include <protocols/jd2/Job.hh>

//project headers
#include <core/pose/Pose.fwd.hh>
// AUTO-REMOVED #include <protocols/moves/Mover.fwd.hh>
#include <utility/options/OptionCollection.hh>

#include <utility/vector1.hh>


//utility headers

namespace protocols {
namespace jd2 {

///@details This is the simplest implementation of JobInputter, which reads from -s/-l and Batch files.
class BatchJobInputter : public protocols::jd2::JobInputter
{
public:
  static std::string const BOGUS_BATCH_ID;
  BatchJobInputter( std::string batch );

  virtual ~BatchJobInputter();

  /// @brief this function is responsible for filling the pose reference with
  /// the pose indicated by the job.  The Job object (within its InnerJob)
  /// contains a PoseCOP.  This function needs to either fill the pose
  /// reference from the InnerJob or, on first demand of a pose from that
  /// InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill
  /// the reference.  This implementation uses pose_from_pdb
  virtual void pose_from_job( core::pose::Pose & pose, JobOP job ) {
    check_batch();
    this_batch_job_inputter_->pose_from_job( pose, job);
  }

  /// @brief this function determines what jobs exist from -in::file::silent and
  /// -in::file::tags.
  virtual void fill_jobs( Jobs & jobs ) {
    check_batch();
    this_batch_job_inputter_->fill_jobs( jobs );
  }

  /// @brief Return the type of input source that the BatchJobInputter is currently
  ///  using.
  /// @return The input source for the current batch.
  virtual JobInputterInputSource::Enum input_source() const;

private:
  void read_batch();
  void check_batch();
  std::string current_batch_;
  JobInputterOP this_batch_job_inputter_;
  utility::options::OptionCollection const vanilla_options_; //options before batch-options were added
}; // BatchJobInputter

} // namespace jd2
} // namespace protocols

#endif //INCLUDED_protocols_jd2_BatchJobInputter_HH