core::import_pose::pose_stream::PoseInputStream Class Reference

#include <PoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::PoseInputStream:

Collaboration diagram for core::import_pose::pose_stream::PoseInputStream:

Public Member Functions
	PoseInputStream ()
virtual	~PoseInputStream ()
virtual bool	has_another_pose ()=0
virtual void	reset ()=0
virtual void	fill_pose (core::pose::Pose &, core::chemical::ResidueTypeSet const &)=0
virtual void	fill_pose (core::pose::Pose &)=0
virtual utility::vector1 < core::pose::Pose >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)
void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Detailed Description

Definition at line 34 of file PoseInputStream.hh.

Constructor & Destructor Documentation

core::import_pose::pose_stream::PoseInputStream::PoseInputStream ( )

inline

Definition at line 36 of file PoseInputStream.hh.

virtual core::import_pose::pose_stream::PoseInputStream::~PoseInputStream ( )

inlinevirtual

Definition at line 37 of file PoseInputStream.hh.

Member Function Documentation

virtual void core::import_pose::pose_stream::PoseInputStream::fill_pose ( core::pose::Pose &  , core::chemical::ResidueTypeSet const &    )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

Referenced by get_all_poses().

virtual void core::import_pose::pose_stream::PoseInputStream::fill_pose ( core::pose::Pose &  )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

utility::vector1< core::pose::Pose > core::import_pose::pose_stream::PoseInputStream::get_all_poses ( core::chemical::ResidueTypeSet const &  residue_set)

virtual

Reimplemented in core::import_pose::pose_stream::PDBPoseInputStream.

Definition at line 65 of file PoseInputStream.cc.

References fill_pose(), and has_another_pose().

virtual bool core::import_pose::pose_stream::PoseInputStream::has_another_pose ( )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

Referenced by get_all_poses().

void core::import_pose::pose_stream::PoseInputStream::preprocess_pose

(

core::pose::Pose &

pose)

Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

Definition at line 45 of file PoseInputStream.cc.

References core::pack::interaction_graph::debug, and core::pose::initialize_disulfide_bonds().

Referenced by core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose(), core::import_pose::pose_stream::PDBPoseInputStream::fill_pose(), and core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose().

virtual void core::import_pose::pose_stream::PoseInputStream::reset ( )

pure virtual

Implemented in core::import_pose::pose_stream::SilentFilePoseInputStream, core::import_pose::pose_stream::PDBPoseInputStream, core::import_pose::pose_stream::LazySilentFilePoseInputStream, core::import_pose::pose_stream::MetaPoseInputStream, and core::import_pose::pose_stream::ExtendedPoseInputStream.

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The documentation for this class was generated from the following files:

• src/core/import_pose/pose_stream/PoseInputStream.hh
• src/core/import_pose/pose_stream/PoseInputStream.cc