protocols::flexpep_docking::FlexPepDockingProtocol Member List

This is the complete list of members for protocols::flexpep_docking::FlexPepDockingProtocol, including all inherited members.

addLowResStatistics(core::pose::Pose const &start_pose, core::pose::Pose &pose_after_lowres) const	protocols::flexpep_docking::FlexPepDockingProtocol	private
allprotein_tf_	protocols::flexpep_docking::FlexPepDockingProtocol	private
apply(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
backrub_move(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
calcMetrics(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
check_filters(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::flexpep_docking::FlexPepDockingProtocol	virtual
create()	protocols::moves::Mover	virtual
design_mover_	protocols::flexpep_docking::FlexPepDockingProtocol	private
design_task_	protocols::flexpep_docking::FlexPepDockingProtocol	private
extend_peptide(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
Filters_map typedef	protocols::moves::Mover
flags_	protocols::flexpep_docking::FlexPepDockingProtocol	private
FlexPepDockingProtocol(Size const rb_jump_in=1)	protocols::flexpep_docking::FlexPepDockingProtocol
FlexPepDockingProtocol(Size const rb_jump_in, bool const fullatom, bool const view=false)	protocols::flexpep_docking::FlexPepDockingProtocol
fpdock_metrics_	protocols::flexpep_docking::FlexPepDockingProtocol	private
fresh_instance() const	protocols::moves::Mover	virtual
fullatom_	protocols::flexpep_docking::FlexPepDockingProtocol	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::flexpep_docking::FlexPepDockingProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
hires_fpdock_protocol(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
if_metrics_	protocols::flexpep_docking::FlexPepDockingProtocol	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
interface_packer_	protocols::flexpep_docking::FlexPepDockingProtocol	private
interface_tf_	protocols::flexpep_docking::FlexPepDockingProtocol	private
is_fail_	protocols::flexpep_docking::FlexPepDockingProtocol	private
is_trimmed_loops_	protocols::flexpep_docking::FlexPepDockingProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loop_relax_mover_	protocols::flexpep_docking::FlexPepDockingProtocol	private
markNativeInterface(ObjexxFCL::FArray1D_bool &superpos_partner, ObjexxFCL::FArray1D_bool &native_interface_residues) const	protocols::flexpep_docking::FlexPepDockingProtocol	private
mc_	protocols::flexpep_docking::FlexPepDockingProtocol	private
minimize_only(core::pose::Pose &pose, const std::string &min_type, const float min_func_tol)	protocols::flexpep_docking::FlexPepDockingProtocol	private
movemap_	protocols::flexpep_docking::FlexPepDockingProtocol	private
movemap_minimizer_	protocols::flexpep_docking::FlexPepDockingProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
nres_peptide_	protocols::flexpep_docking::FlexPepDockingProtocol	private
nres_receptor_	protocols::flexpep_docking::FlexPepDockingProtocol	private
operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)	protocols::flexpep_docking::FlexPepDockingProtocol	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
peptide_random_loop_model(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
polyAla(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
prepack_only(core::pose::Pose &pose, bool ppk_receptor, bool ppk_peptide)	protocols::flexpep_docking::FlexPepDockingProtocol	private
random_peptide_phi_psi_perturbation(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
random_rb_pert(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
randomlySlidePeptideJump(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
rb_jump_	protocols::flexpep_docking::FlexPepDockingProtocol	private
receptor_protector_oper_	protocols::flexpep_docking::FlexPepDockingProtocol	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
rigidbody_monte_carlo_minimize(core::pose::Pose &pose, const int cycles, const std::string &min_type, const float trans_magnitude, const float rot_magnitude, const float minimization_threshold, const float func_tol)	protocols::flexpep_docking::FlexPepDockingProtocol	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
scorefxn_	protocols::flexpep_docking::FlexPepDockingProtocol	private
scorefxn_lowres_	protocols::flexpep_docking::FlexPepDockingProtocol	private
set_allowed_moves()	protocols::flexpep_docking::FlexPepDockingProtocol	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_default()	protocols::flexpep_docking::FlexPepDockingProtocol
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_receptor_constraints(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
setup_foldtree(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
shear_moves(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
small_moves(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
storeJobStatistics(core::pose::Pose const &start_pose, core::pose::Pose &pose_after_lowres, core::pose::Pose &final_pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
Strings typedef	protocols::moves::Mover
TagPtr typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
torsions_monte_carlo_minimize(core::pose::Pose &pose, const int cycles, const std::string &min_type, const float minimization_threshold, const float min_func_tol)	protocols::flexpep_docking::FlexPepDockingProtocol	private
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
view(bool view_in)	protocols::flexpep_docking::FlexPepDockingProtocol	inline
view_	protocols::flexpep_docking::FlexPepDockingProtocol	private
~FlexPepDockingProtocol()	protocols::flexpep_docking::FlexPepDockingProtocol
~Mover()	protocols::moves::Mover	virtual