protocols::match::SecondaryStructureMPM Class Reference

removes positions at which the pose does not have the desired secondary structure More...

#include <MatchPositionModifiers.hh>

Inheritance diagram for protocols::match::SecondaryStructureMPM:

Collaboration diagram for protocols::match::SecondaryStructureMPM:

Public Member Functions
	SecondaryStructureMPM (utility::vector1< std::string > const &input_tokens)
	~SecondaryStructureMPM ()
virtual utility::vector1 < core::Size >	modified_match_positions (utility::vector1< core::Size > const &original_positions, core::pose::Pose const &match_pose, protocols::match::MatcherTaskCOP mtask) const
	the positions in the vector1< Size > that is returned by this function will replace the match positions in the MatcherTask. More...
Public Member Functions inherited from protocols::match::MatchPositionModifier
	MatchPositionModifier ()
virtual	~MatchPositionModifier ()

Private Attributes
std::set< char >	desired_ss_chars_
utility::vector1< std::string >	ss_motifs_

Detailed Description

removes positions at which the pose does not have the desired secondary structure

Definition at line 69 of file MatchPositionModifiers.hh.

Constructor & Destructor Documentation

protocols::match::SecondaryStructureMPM::SecondaryStructureMPM

(

utility::vector1< std::string > const &

input_tokens)

Definition at line 77 of file MatchPositionModifiers.cc.

References desired_ss_chars_, ss_motifs_, and protocols::match::tr().

protocols::match::SecondaryStructureMPM::~SecondaryStructureMPM

(

)

Definition at line 96 of file MatchPositionModifiers.cc.

Member Function Documentation

utility::vector1< core::Size > protocols::match::SecondaryStructureMPM::modified_match_positions ( utility::vector1< core::Size > const &  original_positions, core::pose::Pose const &  match_pose, protocols::match::MatcherTaskCOP  mtask  ) const

virtual

the positions in the vector1< Size > that is returned by this function will replace the match positions in the MatcherTask.

Implements protocols::match::MatchPositionModifier.

Definition at line 99 of file MatchPositionModifiers.cc.

References desired_ss_chars_, core::scoring::dssp::Dssp::get_dssp_secstruct(), ss_motifs_, core::pose::Pose::total_residue(), and protocols::match::tr().

Member Data Documentation

std::set< char > protocols::match::SecondaryStructureMPM::desired_ss_chars_

private

Definition at line 86 of file MatchPositionModifiers.hh.

Referenced by modified_match_positions(), and SecondaryStructureMPM().

utility::vector1< std::string > protocols::match::SecondaryStructureMPM::ss_motifs_

private

Definition at line 87 of file MatchPositionModifiers.hh.

Referenced by modified_match_positions(), and SecondaryStructureMPM().

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The documentation for this class was generated from the following files:

• src/protocols/match/MatchPositionModifiers.hh
• src/protocols/match/MatchPositionModifiers.cc