protocols::swa::StepWiseScreener Member List

This is the complete list of members for protocols::swa::StepWiseScreener, including all inherited members.

apply(core::pose::Pose &pose_to_visualize)	protocols::swa::StepWiseScreener	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
apply_vdw_cut_	protocols::swa::StepWiseScreener	private
centroid_score_diff_cut_	protocols::swa::StepWiseScreener	private
centroid_score_ref_	protocols::swa::StepWiseScreener	private
centroid_scorefxn_	protocols::swa::StepWiseScreener	private
centroid_scores_	protocols::swa::StepWiseScreener	private
centroid_screen_	protocols::swa::StepWiseScreener	private
centroid_vdw_ref_	protocols::swa::StepWiseScreener	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
convert_to_centroid(core::pose::Pose &pose)	protocols::swa::StepWiseScreener	private
copy_coords(core::pose::Pose &pose, core::pose::Pose const &template_pose, ResMap const &ghost_map) const	protocols::swa::StepWiseScreener	private
create()	protocols::moves::Mover	virtual
figure_out_fold_tree(ResMap const &ghost_map) const	protocols::swa::StepWiseScreener	private
filter_and_output(core::pose::Pose &pose, std::string const &tag)	protocols::swa::StepWiseScreener	private
filter_main_chain_torsion_sets()	protocols::swa::StepWiseScreener	private
filter_native_BIG_BINS(core::Size const &n, MainChainTorsionSetList &main_chain_torsion_set_list)	protocols::swa::StepWiseScreener	private
filter_native_big_bins_	protocols::swa::StepWiseScreener	private
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_big_bin(core::Real const phi, core::Real const psi) const	protocols::swa::StepWiseScreener	private
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_main_chain_torsion_set_list(core::Size const &n, core::pose::Pose const &pose, MainChainTorsionSetList &main_chain_torsion_set_list)	protocols::swa::StepWiseScreener	private
get_main_chain_torsion_set_list_c_terminus(core::Size const &n, core::pose::Pose const &pose, core::Real const &best_energy_cutoff, MainChainTorsionSetList &main_chain_torsion_set_list)	protocols::swa::StepWiseScreener	private
get_main_chain_torsion_set_list_coarse(core::Size const &n, core::pose::Pose const &pose, MainChainTorsionSetList &main_chain_torsion_set_list)	protocols::swa::StepWiseScreener	private
get_main_chain_torsion_set_list_full(core::Size const &n, core::pose::Pose const &pose, core::Real const &best_energy_cutoff, MainChainTorsionSetList &main_chain_torsion_set_list)	protocols::swa::StepWiseScreener	private
get_main_chain_torsion_set_list_n_terminus(core::Size const &n, core::pose::Pose const &pose, core::Real const &best_energy_cutoff, MainChainTorsionSetList &main_chain_torsion_set_list)	protocols::swa::StepWiseScreener	private
get_main_chain_torsion_set_list_sample_phi_only(core::Size const &n, core::pose::Pose const &pose, core::Real const &best_energy_cutoff, MainChainTorsionSetList &main_chain_torsion_set_list)	protocols::swa::StepWiseScreener	private
get_main_chain_torsion_set_list_sample_psi_only(core::Size const &n, core::pose::Pose const &pose, core::Real const &best_energy_cutoff, MainChainTorsionSetList &main_chain_torsion_set_list)	protocols::swa::StepWiseScreener	private
get_name() const	protocols::swa::StepWiseScreener	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
ghost_loops_	protocols::swa::StepWiseScreener	private
ghost_map_	protocols::swa::StepWiseScreener	private
ghost_native_pose_	protocols::swa::StepWiseScreener	private
ghost_pose_	protocols::swa::StepWiseScreener	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initialize_ghost_pose(core::pose::PoseOP &ghost_pose, std::string const &desired_sequence, core::pose::Pose const &template_pose, ResMap const &ghost_map, core::kinematics::FoldTree f)	protocols::swa::StepWiseScreener	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
main_chain_torsion_set_for_moving_residues_	protocols::swa::StepWiseScreener	private
main_chain_torsion_set_lists() const	protocols::swa::StepWiseScreener
main_chain_torsion_sets_for_moving_residues_	protocols::swa::StepWiseScreener	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
moving_residues_	protocols::swa::StepWiseScreener	private
n_sample_	protocols::swa::StepWiseScreener	private
name()	protocols::moves::Mover	inlinestatic
nstruct_centroid_	protocols::swa::StepWiseScreener	private
operator=(Mover const &other)	protocols::moves::Mover
output_centroid_silent_struct(core::pose::Pose const &pose, core::pose::PoseCOP const &native_pose_op, std::string const silent_file, std::string const &tag)	protocols::swa::StepWiseScreener	private
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
prepare_ghost_pose(core::pose::Pose const &pose)	protocols::swa::StepWiseScreener	private
ramachandran_	protocols::swa::StepWiseScreener	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
rmsd_cutoff_	protocols::swa::StepWiseScreener	private
sample_residues_recursively(Size const which_res, Size &count, core::pose::Pose &pose)	protocols::swa::StepWiseScreener	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
set_apply_vdw_cut(bool const &setting)	protocols::swa::StepWiseScreener
set_centroid_score_diff_cut(core::Real const &setting)	protocols::swa::StepWiseScreener
set_centroid_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn)	protocols::swa::StepWiseScreener
set_centroid_screen(bool const &setting)	protocols::swa::StepWiseScreener
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_filter_native_big_bins(bool const &setting)	protocols::swa::StepWiseScreener
set_ghost_loops(bool const &setting)	protocols::swa::StepWiseScreener
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_n_sample(core::Size const &setting)	protocols::swa::StepWiseScreener
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_nstruct_centroid(core::Size const &setting)	protocols::swa::StepWiseScreener
set_rmsd_cutoff(core::Real const &setting)	protocols::swa::StepWiseScreener
set_silent_file(std::string const &setting)	protocols::swa::StepWiseScreener
silent_file_	protocols::swa::StepWiseScreener	private
StepWiseScreener(utility::vector1< Size > const &moving_residues)	protocols::swa::StepWiseScreener
Strings typedef	protocols::moves::Mover
TagPtr typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
~Mover()	protocols::moves::Mover	virtual
~StepWiseScreener()	protocols::swa::StepWiseScreener