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protocols::antibody2::AntibodyModelerProtocol Member List

This is the complete list of members for protocols::antibody2::AntibodyModelerProtocol, including all inherited members.

ab_info_protocols::antibody2::AntibodyModelerProtocolprivate
AntibodyModelerProtocol()protocols::antibody2::AntibodyModelerProtocol
apply(pose::Pose &pose)protocols::antibody2::AntibodyModelerProtocolvirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
bad_nter_protocols::antibody2::AntibodyModelerProtocolprivate
benchmark_protocols::antibody2::AntibodyModelerProtocolprivate
camelid_protocols::antibody2::AntibodyModelerProtocolprivate
camelid_constraints_protocols::antibody2::AntibodyModelerProtocolprivate
cdr_constraint_protocols::antibody2::AntibodyModelerProtocolprivate
cen_cst_protocols::antibody2::AntibodyModelerProtocolprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::antibody2::AntibodyModelerProtocolvirtual
constrain_cter_protocols::antibody2::AntibodyModelerProtocolprivate
constrain_vlvh_qq_protocols::antibody2::AntibodyModelerProtocolprivate
create()protocols::moves::Movervirtual
cst_weight_protocols::antibody2::AntibodyModelerProtocolprivate
cter_insert_protocols::antibody2::AntibodyModelerProtocolprivate
display_constraint_residues(pose::Pose &pose)protocols::antibody2::AntibodyModelerProtocol
dock_scorefxn_highres_protocols::antibody2::AntibodyModelerProtocolprivate
Filters_map typedefprotocols::moves::Mover
finalize_setup(core::pose::Pose &pose)protocols::antibody2::AntibodyModelerProtocolprivate
flags_and_objects_are_in_sync_protocols::antibody2::AntibodyModelerProtocolprivate
flank_residue_min_protocols::antibody2::AntibodyModelerProtocolprivate
flank_residue_size_protocols::antibody2::AntibodyModelerProtocolprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::antibody2::AntibodyModelerProtocolvirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
h3_filter_protocols::antibody2::AntibodyModelerProtocolprivate
h3_filter_tolerance_protocols::antibody2::AntibodyModelerProtocolprivate
h3_perturb_type_protocols::antibody2::AntibodyModelerProtocolprivate
h3_refine_type_protocols::antibody2::AntibodyModelerProtocolprivate
high_cst_protocols::antibody2::AntibodyModelerProtocolprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
init()protocols::antibody2::AntibodyModelerProtocolprivate
init_from_options()protocols::antibody2::AntibodyModelerProtocolprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
LH_repulsive_ramp_protocols::antibody2::AntibodyModelerProtocolprivate
loop_scorefxn_centroid_protocols::antibody2::AntibodyModelerProtocolprivate
loop_scorefxn_highres_protocols::antibody2::AntibodyModelerProtocolprivate
middle_pack_min_protocols::antibody2::AntibodyModelerProtocolprivate
model_h3_protocols::antibody2::AntibodyModelerProtocolprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
operator<<(std::ostream &out, const AntibodyModelerProtocol &ab_m)protocols::antibody2::AntibodyModelerProtocolfriend
operator=(Mover const &other)protocols::moves::Mover
pack_scorefxn_protocols::antibody2::AntibodyModelerProtocolprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
refine_h3_protocols::antibody2::AntibodyModelerProtocolprivate
register_options()protocols::antibody2::AntibodyModelerProtocolstatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
rt_min_protocols::antibody2::AntibodyModelerProtocolprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
sc_min_protocols::antibody2::AntibodyModelerProtocolprivate
set_bad_nter(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_BenchMark(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_constrain_cter(bool const setting)protocols::antibody2::AntibodyModelerProtocolinline
set_constrain_vlvh_qq(bool const setting)protocols::antibody2::AntibodyModelerProtocolinline
set_cst_weight(core::Real const cst_weight)protocols::antibody2::AntibodyModelerProtocolinline
set_CterInsert(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_default()protocols::antibody2::AntibodyModelerProtocol
set_flank_residue_min(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_flank_residue_size(core::Real const flank_residue_size)protocols::antibody2::AntibodyModelerProtocolinline
set_H3Filter(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_H3Filter_Tolerance(core::Size const number)protocols::antibody2::AntibodyModelerProtocolinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_middle_pack_min(bool middle_pack_min)protocols::antibody2::AntibodyModelerProtocolinline
set_ModelH3(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_perturb_type(std::string remodel)protocols::antibody2::AntibodyModelerProtocolinline
set_refine_h3(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_refine_type(std::string refine)protocols::antibody2::AntibodyModelerProtocolinline
set_rt_min(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_sc_min(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_SnugFit(bool setting)protocols::antibody2::AntibodyModelerProtocolinline
set_use_constraints(bool const use_csts)protocols::antibody2::AntibodyModelerProtocolinline
setup_objects()protocols::antibody2::AntibodyModelerProtocolprivate
show(std::ostream &out=std::cout)protocols::antibody2::AntibodyModelerProtocol
snugfit_protocols::antibody2::AntibodyModelerProtocolprivate
Strings typedefprotocols::moves::Mover
sync_objects_with_flags()protocols::antibody2::AntibodyModelerProtocol
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
use_csts_protocols::antibody2::AntibodyModelerProtocolprivate
user_defined_protocols::antibody2::AntibodyModelerProtocolprivate
~AntibodyModelerProtocol()protocols::antibody2::AntibodyModelerProtocol
~Mover()protocols::moves::Movervirtual
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