protocols::simple_moves::ddG Member List

This is the complete list of members for protocols::simple_moves::ddG, including all inherited members.

allowed_aas_	protocols::simple_moves::DesignRepackMover	protected
apply(Pose &pose)	protocols::simple_moves::ddG	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
automatic_repacking_definition_	protocols::simple_moves::DesignRepackMover	protected
bound_energies_	protocols::simple_moves::ddG	private
bound_per_residue_energies_	protocols::simple_moves::ddG	private
bound_total_energy_	protocols::simple_moves::ddG	private
calculate(Pose const &pose_in)	protocols::simple_moves::ddG
chain_ids_	protocols::simple_moves::ddG	private
clear_info()	protocols::moves::Mover	inlinevirtual
clear_task()	protocols::simple_moves::DesignRepackMover
clear_task_factory()	protocols::simple_moves::DesignRepackMover
clone() const	protocols::simple_moves::ddG	virtual
create()	protocols::moves::Mover	virtual
curr_min_bb_	protocols::simple_moves::DesignRepackMover	protected
curr_min_rb_	protocols::simple_moves::DesignRepackMover	protected
curr_min_sc_	protocols::simple_moves::DesignRepackMover	protected
ddG()	protocols::simple_moves::ddG
ddG(core::scoring::ScoreFunctionCOP scorefxn_in, core::Size const jump=1, bool const symmetry=false)	protocols::simple_moves::ddG
ddG(core::scoring::ScoreFunctionCOP scorefxn_in, core::Size const jump, utility::vector1< core::Size > const &chain_ids, bool const symmetry)	protocols::simple_moves::ddG
DEFAULT_TRANSLATION_DISTANCE	protocols::simple_moves::ddG	static
design(bool const des)	protocols::simple_moves::DesignRepackMover	inline
design() const	protocols::simple_moves::DesignRepackMover	inline
design_partner1_	protocols::simple_moves::DesignRepackMover	protected
design_partner2_	protocols::simple_moves::DesignRepackMover	protected
DesignRepackMover()	protocols::simple_moves::DesignRepackMover
DesignRepackMover(std::string const name)	protocols::simple_moves::DesignRepackMover
fill_energy_vector(Pose const &pose, std::map< ScoreType, Real > &energy_map)	protocols::simple_moves::ddG	private
fill_per_residue_energy_vector(Pose const &pose, std::map< Size, Real > &energy_map)	protocols::simple_moves::ddG	private
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::simple_moves::ddG	inlinevirtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::simple_moves::ddG	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
interface_distance_cutoff_	protocols::simple_moves::DesignRepackMover	protected
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
min_bb(utility::vector1< bool > const &min_bb)	protocols::simple_moves::DesignRepackMover	inline
min_bb() const	protocols::simple_moves::DesignRepackMover	inline
min_bb_	protocols::simple_moves::DesignRepackMover	protected
min_bb_set() const	protocols::simple_moves::DesignRepackMover	inline
min_bb_set_	protocols::simple_moves::DesignRepackMover	protected
min_rb(utility::vector1< bool > const min_rb)	protocols::simple_moves::DesignRepackMover	inline
min_rb(bool const min_rb)	protocols::simple_moves::DesignRepackMover	inline
min_rb() const	protocols::simple_moves::DesignRepackMover	inline
min_rb_	protocols::simple_moves::DesignRepackMover	protected
min_rb_set() const	protocols::simple_moves::DesignRepackMover	inline
min_rb_set_	protocols::simple_moves::DesignRepackMover	protected
min_sc(utility::vector1< bool > const &min_sc)	protocols::simple_moves::DesignRepackMover	inline
min_sc() const	protocols::simple_moves::DesignRepackMover	inline
min_sc_	protocols::simple_moves::DesignRepackMover	protected
min_sc_set() const	protocols::simple_moves::DesignRepackMover	inline
min_sc_set_	protocols::simple_moves::DesignRepackMover	protected
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
no_repack_ddG(core::pose::Pose &pose_in)	protocols::simple_moves::ddG
operator=(Mover const &other)	protocols::moves::Mover
optimize_foldtree() const	protocols::simple_moves::DesignRepackMover	inline
optimize_foldtree(bool const opt)	protocols::simple_moves::DesignRepackMover	inline
optimize_foldtree_	protocols::simple_moves::DesignRepackMover	protected
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(utility::tag::TagPtr const, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)	protocols::simple_moves::ddG	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
pb_cached_data_	protocols::simple_moves::ddG	private
pb_enabled_	protocols::simple_moves::ddG	private
per_residue_ddg_	protocols::simple_moves::ddG	private
Pose typedef	protocols::simple_moves::ddG
PoseCOP typedef	protocols::moves::Mover
prevent_repacking(utility::vector1< core::Size > const p)	protocols::simple_moves::DesignRepackMover	inline
prevent_repacking() const	protocols::simple_moves::DesignRepackMover	inline
prevent_repacking_	protocols::simple_moves::DesignRepackMover	protected
rb_jump() const	protocols::simple_moves::ddG	inline
rb_jump(core::Size j)	protocols::simple_moves::ddG	inline
rb_jump_	protocols::simple_moves::ddG	private
Real typedef	protocols::simple_moves::ddG
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
relax_bound(bool rlb)	protocols::simple_moves::ddG	inline
relax_bound() const	protocols::simple_moves::ddG	inline
relax_bound_	protocols::simple_moves::ddG	private
relax_mover() const	protocols::simple_moves::ddG	inline
relax_mover(protocols::moves::MoverOP m)	protocols::simple_moves::ddG	inline
relax_mover_	protocols::simple_moves::ddG	private
repack_	protocols::simple_moves::ddG	private
repack_bound(bool rpb)	protocols::simple_moves::ddG	inline
repack_bound() const	protocols::simple_moves::ddG	inline
repack_bound_	protocols::simple_moves::ddG	private
repack_non_ala_	protocols::simple_moves::DesignRepackMover	protected
repack_partner1_	protocols::simple_moves::DesignRepackMover	protected
repack_partner2_	protocols::simple_moves::DesignRepackMover	protected
repeats() const	protocols::simple_moves::ddG	inline
repeats(core::Size repeats)	protocols::simple_moves::ddG	inline
repeats_	protocols::simple_moves::ddG	private
report_ddG(std::ostream &out) const	protocols::simple_moves::ddG
reset_status()	protocols::moves::Mover
restrict_to_repacking(utility::vector1< core::Size > const p)	protocols::simple_moves::DesignRepackMover	inline
restrict_to_repacking() const	protocols::simple_moves::DesignRepackMover	inline
restrict_to_repacking_	protocols::simple_moves::DesignRepackMover	protected
save_state(SerializableState &state)	protocols::moves::Mover	virtual
scorefxn_	protocols::simple_moves::ddG	private
scorefxn_minimize() const	protocols::simple_moves::DesignRepackMover
scorefxn_minimize_	protocols::simple_moves::DesignRepackMover	protected
scorefxn_repack() const	protocols::simple_moves::DesignRepackMover
scorefxn_repack_	protocols::simple_moves::DesignRepackMover	protected
ScoreType typedef	protocols::simple_moves::ddG
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_scorefxn_minimize(core::scoring::ScoreFunctionCOP scorefxn)	protocols::simple_moves::DesignRepackMover
set_scorefxn_repack(core::scoring::ScoreFunctionCOP scorefxn)	protocols::simple_moves::DesignRepackMover
setup_packer_and_movemap(core::pose::Pose const &pose)	protocols::simple_moves::DesignRepackMover
Strings typedef	protocols::moves::Mover
sum_ddG() const	protocols::simple_moves::ddG
symm_ddG(core::pose::Pose &pose_in)	protocols::simple_moves::ddG
symmetry_	protocols::simple_moves::ddG	private
TagPtr typedef	protocols::moves::Mover
target_residues_	protocols::simple_moves::DesignRepackMover	protected
task() const	protocols::simple_moves::DesignRepackMover
task()	protocols::simple_moves::DesignRepackMover
task_	protocols::simple_moves::DesignRepackMover	protected
task_factory(core::pack::task::TaskFactoryOP task_factory)	protocols::simple_moves::ddG	inline
task_factory() const	protocols::simple_moves::ddG	inline
protocols::simple_moves::DesignRepackMover::task_factory()	protocols::simple_moves::DesignRepackMover
task_factory_	protocols::simple_moves::ddG	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
translate_by_	protocols::simple_moves::ddG	private
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
unbound_energies_	protocols::simple_moves::ddG	private
unbound_per_residue_energies_	protocols::simple_moves::ddG	private
unbound_total_energy_	protocols::simple_moves::ddG	private
use_custom_task(bool uct)	protocols::simple_moves::ddG	inline
use_custom_task() const	protocols::simple_moves::ddG	inline
use_custom_task_	protocols::simple_moves::ddG	private
use_preset_task(bool const bt)	protocols::simple_moves::DesignRepackMover	inline
use_preset_task() const	protocols::simple_moves::DesignRepackMover	inline
use_preset_task_	protocols::simple_moves::DesignRepackMover	protected
~ddG()	protocols::simple_moves::ddG	virtual
~DesignRepackMover()	protocols::simple_moves::DesignRepackMover	virtual
~Mover()	protocols::moves::Mover	virtual