util.hh

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
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// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
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/// @file /protocols/relax/util.hh
/// @brief initialization protocols for relax and utility functions
///
/// @author Mike Tyka


#ifndef INCLUDED_protocols_relax_util_hh
#define INCLUDED_protocols_relax_util_hh
// AUTO-REMOVED #include <core/scoring/MembraneTopology.fwd.hh> //pba

#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.fwd.hh>

#include <protocols/relax/RelaxProtocolBase.fwd.hh>

#include <utility/vector1.hh>


//// C++ headers

namespace protocols {
namespace relax {

///@brief (pba)  read in membrane topology
void setup_membrane_topology( core::pose::Pose & pose, std::string spanfile );

///@brief Make DNA Rigid in movemap if found in pose
void make_dna_rigid(core::pose::Pose & pose, core::kinematics::MoveMap & mm);

void relax_pose( core::pose::Pose& pose, core::scoring::ScoreFunctionOP scorefxn, std::string const& tag );

RelaxProtocolBaseOP generate_relax_from_cmd( bool NULL_if_no_cmd = false );

}
} // protocols

#endif