#include <AlignEvaluator.hh>

Inheritance diagram for protocols::evaluation::AlignEvaluator:

Collaboration diagram for protocols::evaluation::AlignEvaluator:

Public Member Functions
	AlignEvaluator (core::pose::PoseCOP native_pose, std::string tag="", bool report_aln_components=true, core::sequence::SequenceAlignmentOP aln=0)

	~AlignEvaluator ()

virtual void	apply (core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &ss) const =0
	evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining. More...

virtual core::Real	apply (core::pose::Pose &) const
	outdated method - don't use! More...

core::sequence::SequenceAlignmentOP	get_alignment (core::pose::Pose const &pose) const

void	report_aln_components (bool const setting)

bool	report_aln_components () const

std::string	tag () const

core::pose::PoseCOP	native_pose () const

Public Member Functions inherited from protocols::evaluation::SingleValuePoseEvaluator< core::Real >
	SingleValuePoseEvaluator (std::string name)

virtual bool	applicable (core::pose::Pose const &) const

virtual core::Size	size () const

virtual std::string	name (core::Size) const

Public Member Functions inherited from protocols::evaluation::PoseEvaluator
	PoseEvaluator ()

virtual	~PoseEvaluator ()

virtual void	apply (core::io::silent::SilentStruct &pss) const
	direct application to SilentStruct... default implementation makes pose and calls "apply", you can overload if you don't need the pose-step More...

Private Attributes
core::pose::PoseCOP	native_pose_

std::string	tag_

bool	report_aln_components_

core::sequence::SequenceAlignmentOP	aln_

Detailed Description

Definition at line 36 of file AlignEvaluator.hh.

Constructor & Destructor Documentation

protocols::evaluation::AlignEvaluator::AlignEvaluator	(	core::pose::PoseCOP	native_pose,
		std::string	tag = `""`,
		bool	report_aln_components = `true`,
		core::sequence::SequenceAlignmentOP	aln = `0`
	)

Definition at line 44 of file AlignEvaluator.cc.

protocols::evaluation::AlignEvaluator::~AlignEvaluator ( )

Definition at line 42 of file AlignEvaluator.cc.

Member Function Documentation

virtual void protocols::evaluation::AlignEvaluator::apply	(	core::pose::Pose &	,
		std::string	tag,
		core::io::silent::SilentStruct &	pss
	)		const

pure virtual

evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining.

Reimplemented from protocols::evaluation::SingleValuePoseEvaluator< core::Real >.

Implemented in protocols::comparative_modeling::Align_RmsdEvaluator, and protocols::comparative_modeling::Align_RotamerEvaluator.

virtual core::Real protocols::evaluation::AlignEvaluator::apply ( core::pose::Pose & ) const

inlinevirtual

outdated method - don't use!

Implements protocols::evaluation::SingleValuePoseEvaluator< core::Real >.

Reimplemented in protocols::comparative_modeling::Align_RmsdEvaluator, and protocols::comparative_modeling::Align_RotamerEvaluator.

Definition at line 55 of file AlignEvaluator.hh.

core::sequence::SequenceAlignmentOP protocols::evaluation::AlignEvaluator::get_alignment ( core::pose::Pose const & pose) const

Definition at line 57 of file AlignEvaluator.cc.

References core::sequence::align_naive(), aln_, native_pose_, core::pose::Pose::sequence(), and protocols::evaluation::tr().

Referenced by protocols::comparative_modeling::Align_RotamerEvaluator::apply(), and protocols::comparative_modeling::Align_RmsdEvaluator::apply().