protocols::protein_interface_design::filters::StubScoreLoopsFilter Class Reference

#include <StubScoreLoopsFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::StubScoreLoopsFilter:

Collaboration diagram for protocols::protein_interface_design::filters::StubScoreLoopsFilter:

Public Member Functions
	StubScoreLoopsFilter ()
	default ctor More...
virtual	~StubScoreLoopsFilter ()
virtual protocols::filters::FilterOP	clone () const
virtual protocols::filters::FilterOP	fresh_instance () const
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
Public Member Functions inherited from protocols::simple_filters::ConstraintScoreCutoffFilter
	ConstraintScoreCutoffFilter ()
	c-tor and More...
	ConstraintScoreCutoffFilter (core::Real cutoff_in)
filters::FilterOP	clone () const
filters::FilterOP	fresh_instance () const
virtual void	report (std::ostream &ostr, core::pose::Pose const &pose) const
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
virtual bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. In this case, the test is the result of the following comparison: sc <= cutoff Where cutoff is the cutoff set for this filter, and sc is the value of the ScoreType from the Pose Energies object. More...
void	set_cutoff (core::Real cutoff_in)
void	set_cutoff (core::pose::Pose const &pose)
core::Real	cutoff () const
void	set_constraints (core::scoring::constraints::ConstraintCOPs cst_in)
void	set_score_type (core::scoring::ScoreType scotype)
core::Real	get_score (core::pose::Pose const &pose) const
virtual std::string	name () const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Types
typedef protocols::simple_filters::ConstraintScoreCutoffFilter	Parent
typedef std::pair < protocols::hotspot_hashing::HotspotStubSetOP, std::pair < protocols::hotspot_hashing::HotspotStubOP, core::Size > >	StubSetStubPos

Private Attributes
hotspot_hashing::HotspotStubSetOP	stub_set_
std::string	resfile_
core::Real	cb_force_

Additional Inherited Members
Public Types inherited from protocols::simple_filters::ConstraintScoreCutoffFilter
typedef protocols::filters::Filter	parent
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 40 of file StubScoreLoopsFilter.hh.

Member Typedef Documentation

typedef protocols::simple_filters::ConstraintScoreCutoffFilter protocols::protein_interface_design::filters::StubScoreLoopsFilter::Parent

private

Definition at line 43 of file StubScoreLoopsFilter.hh.

typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > protocols::protein_interface_design::filters::StubScoreLoopsFilter::StubSetStubPos

private

Definition at line 44 of file StubScoreLoopsFilter.hh.

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::StubScoreLoopsFilter::StubScoreLoopsFilter

(

)

default ctor

Definition at line 44 of file StubScoreLoopsFilter.cc.

References core::scoring::backbone_stub_constraint, and protocols::simple_filters::ConstraintScoreCutoffFilter::set_score_type().

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::StubScoreLoopsFilter::~StubScoreLoopsFilter ( )

virtual

Definition at line 50 of file StubScoreLoopsFilter.cc.

Member Function Documentation

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 80 of file StubScoreLoopsFilter.cc.

References StubScoreLoopsFilter().

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 74 of file StubScoreLoopsFilter.cc.

References StubScoreLoopsFilter().

void protocols::protein_interface_design::filters::StubScoreLoopsFilter::parse_my_tag ( utility::tag::TagPtr const  tag, protocols::moves::DataMap &  , protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &  pose  )

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 53 of file StubScoreLoopsFilter.cc.

References cb_force_, protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::generate_csts(), resfile_, protocols::simple_filters::ConstraintScoreCutoffFilter::set_constraints(), protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::set_resfile(), and stub_set_.

Member Data Documentation

core::Real protocols::protein_interface_design::filters::StubScoreLoopsFilter::cb_force_

private

Definition at line 62 of file StubScoreLoopsFilter.hh.

Referenced by parse_my_tag().

std::string protocols::protein_interface_design::filters::StubScoreLoopsFilter::resfile_

private

Definition at line 61 of file StubScoreLoopsFilter.hh.

Referenced by parse_my_tag().

hotspot_hashing::HotspotStubSetOP protocols::protein_interface_design::filters::StubScoreLoopsFilter::stub_set_

private

Definition at line 60 of file StubScoreLoopsFilter.hh.

Referenced by parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/StubScoreLoopsFilter.hh
• src/protocols/protein_interface_design/filters/StubScoreLoopsFilter.cc