core::pack::task::operation::OptCysHG Class Reference

run optH on non-disulfided bonded CYS only; meant to relieve any clashes caused by swapping of CYD->CYS after calling Conformation::detect_disulfides() More...

#include <OptCysHG.hh>

Inheritance diagram for core::pack::task::operation::OptCysHG:

Collaboration diagram for core::pack::task::operation::OptCysHG:

Public Types
typedef core::pack::task::PackerTask	PackerTask
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef core::pose::Pose	Pose
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr
typedef pose::Pose	Pose

Public Member Functions
	OptCysHG ()
	default constructor More...
	OptCysHG (OptCysHG const &rval)
	copy constructor More...
virtual	~OptCysHG ()
	default destructor More...
virtual TaskOperationOP	clone () const
	clone this object More...
virtual void	apply (Pose const &pose, PackerTask &task) const
	apply operations to PackerTask More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Types
typedef core::pack::task::operation::TaskOperation	Super

Detailed Description

run optH on non-disulfided bonded CYS only; meant to relieve any clashes caused by swapping of CYD->CYS after calling Conformation::detect_disulfides()

Definition at line 37 of file OptCysHG.hh.

Member Typedef Documentation

typedef core::pack::task::PackerTask core::pack::task::operation::OptCysHG::PackerTask

Definition at line 49 of file OptCysHG.hh.

typedef core::pose::Pose core::pack::task::operation::OptCysHG::Pose

Definition at line 51 of file OptCysHG.hh.

typedef core::pack::task::operation::TaskOperation core::pack::task::operation::OptCysHG::Super

private

Definition at line 43 of file OptCysHG.hh.

typedef core::pack::task::operation::TaskOperationOP core::pack::task::operation::OptCysHG::TaskOperationOP

Definition at line 50 of file OptCysHG.hh.

Constructor & Destructor Documentation

core::pack::task::operation::OptCysHG::OptCysHG

(

)

default constructor

Definition at line 41 of file OptCysHG.cc.

Referenced by clone().

core::pack::task::operation::OptCysHG::OptCysHG

(

OptCysHG const &

rval)

copy constructor

Definition at line 47 of file OptCysHG.cc.

core::pack::task::operation::OptCysHG::~OptCysHG ( )

virtual

default destructor

Definition at line 53 of file OptCysHG.cc.

Member Function Documentation

void core::pack::task::operation::OptCysHG::apply ( Pose const &  pose, PackerTask &  task  ) const

virtual

apply operations to PackerTask

Implements core::pack::task::operation::TaskOperation.

Definition at line 67 of file OptCysHG.cc.

References core::conformation::Residue::aa(), core::chemical::aa_cys, core::pack::task::operation::OptH::apply(), core::pack::task::operation::OptH::disallow_resid(), core::chemical::DISULFIDE, core::conformation::Residue::has_variant_type(), core::pose::Pose::n_residue(), core::chemical::ResidueType::name3(), core::pose::Pose::residue(), and core::pose::Pose::residue_type().

OptCysHG::TaskOperationOP core::pack::task::operation::OptCysHG::clone ( ) const

virtual

clone this object

Implements core::pack::task::operation::TaskOperation.

Definition at line 61 of file OptCysHG.cc.

References OptCysHG().

---

The documentation for this class was generated from the following files:

• src/core/pack/task/operation/OptCysHG.hh
• src/core/pack/task/operation/OptCysHG.cc