#include <NoOutputJobOutputter.hh>

Inheritance diagram for protocols::jd2::NoOutputJobOutputter:

Collaboration diagram for protocols::jd2::NoOutputJobOutputter:

Public Member Functions
	NoOutputJobOutputter ()

virtual void	file (JobCOP, std::string const &)
	this function takes a string and writes it to disk (separately from Tracer output). use some sort of extention option system - default .dat? .data? More...

virtual void	final_pose (JobCOP, core::pose::Pose const &)
	this function outputs the final result of a job. More...

virtual void	other_pose (JobCOP, core::pose::Pose const &, std::string const &, int, bool)
	this function is intended for saving mid-protocol poses; for example the final centroid structure in a combined centroid/fullatom protocol. More...

virtual bool	job_has_completed (JobCOP)
	this function is not used for output, but it belongs here since it needs to check the same output locations as the class normally writes to. This class checks wherever output goes to see if the job's expected output already exists (on disk or whatever). This is the most basic form of checkpointing. More...

virtual std::string	output_name (JobCOP job)
	this is the master function for determining the unique output identifier for a job - should this be defined in the base class? More...

Public Member Functions inherited from protocols::jd2::JobOutputter
	JobOutputter ()

virtual	~JobOutputter ()

virtual void	flush ()
	this function is meant to be redefined in child classes to allow for flushing of memory buffers. More...

virtual void	starting_pose (core::pose::Pose const &)
	optionally pass a starting (reference) pose to a JobOutputter for later comparison purposes and/or as interface for initializing evaluators More...

virtual std::string	filename (JobCOP) const

void	add_evaluation (evaluation::PoseEvaluatorOP)

void	set_evaluators (evaluation::PoseEvaluators const &)

void	clear_evaluators ()
	clear the list of evaluators More...

evaluation::PoseEvaluatorsCOP	evaluators () const

void	evaluate (core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &pss) const

Additional Inherited Members
Protected Member Functions inherited from protocols::jd2::JobOutputter
std::string	affixed_numbered_name (JobCOP job)
	this function provides the extended name, not just the output name. e.g output_name returns 1UBQ_0001, this returns 1UBQ_0001.pdb More...

Detailed Description

the NoOutputJobOutputter class is responsible for NOT dealing with output

Definition at line 36 of file NoOutputJobOutputter.hh.

Constructor & Destructor Documentation

protocols::jd2::NoOutputJobOutputter::NoOutputJobOutputter ( )

inline

Definition at line 40 of file NoOutputJobOutputter.hh.

Member Function Documentation

virtual void protocols::jd2::NoOutputJobOutputter::file	(	JobCOP	,
		std::string const &
	)

inlinevirtual

this function takes a string and writes it to disk (separately from Tracer output). use some sort of extention option system - default .dat? .data?

Implements protocols::jd2::JobOutputter.

Definition at line 47 of file NoOutputJobOutputter.hh.

virtual void protocols::jd2::NoOutputJobOutputter::final_pose	(	JobCOP	,
		core::pose::Pose const &
	)

inlinevirtual

this function outputs the final result of a job.

Implements protocols::jd2::JobOutputter.

Definition at line 51 of file NoOutputJobOutputter.hh.

virtual bool protocols::jd2::NoOutputJobOutputter::job_has_completed ( JobCOP )

inlinevirtual

this function is not used for output, but it belongs here since it needs to check the same output locations as the class normally writes to. This class checks wherever output goes to see if the job's expected output already exists (on disk or whatever). This is the most basic form of checkpointing.

Implements protocols::jd2::JobOutputter.

Definition at line 61 of file NoOutputJobOutputter.hh.

virtual void protocols::jd2::NoOutputJobOutputter::other_pose	(	JobCOP	,
		core::pose::Pose const &	,
		std::string const &	,
		int	,
		bool
	)

inlinevirtual

this function is intended for saving mid-protocol poses; for example the final centroid structure in a combined centroid/fullatom protocol.

Implements protocols::jd2::JobOutputter.

Definition at line 55 of file NoOutputJobOutputter.hh.

virtual std::string protocols::jd2::NoOutputJobOutputter::output_name ( JobCOP job)

inlinevirtual

this is the master function for determining the unique output identifier for a job - should this be defined in the base class?

Implements protocols::jd2::JobOutputter.

Definition at line 63 of file NoOutputJobOutputter.hh.

References protocols::jd2::JobOutputter::affixed_numbered_name().

The documentation for this class was generated from the following file:

src/protocols/jd2/NoOutputJobOutputter.hh

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation