protocols::multistate_design::PackingState Class Reference

#include <PackingState.hh>

Inheritance diagram for protocols::multistate_design::PackingState:

Collaboration diagram for protocols::multistate_design::PackingState:

Public Member Functions
	PackingState ()
	PackingState (core::pose::Pose const &pose_in, bool is_positive)
virtual	~PackingState ()
void	create_packer_data (core::scoring::ScoreFunctionCOP scorefxn, core::pack::task::PackerTaskCOP ptask)
void	share_packer_data_from (PackingState &other)
void	run_packer (utility::vector0< int > const &rot_to_pack)
core::pack::task::PackerTaskCOP	ptask () const
core::pack::rotamer_set::RotamerSetsCOP	rotamersets () const
core::pack::interaction_graph::InteractionGraphBaseCOP	ig () const
Public Member Functions inherited from protocols::multistate_design::SingleState
	SingleState ()
virtual	~SingleState ()
	SingleState (core::pose::Pose const &pose, bool is_positive)
	SingleState (SingleState const &other)
virtual void	set_best_score (core::Real score)
virtual core::Real	best_score () const
virtual bool	is_positive_state () const
virtual core::pose::Pose const &	pose () const
virtual core::pose::Pose &	nonconst_pose ()
void	fitness_function (SingleStateFitnessFunctionCOP fitness_function)
SingleStateFitnessFunctionCOP	fitness_function () const

Protected Member Functions
core::pack::rotamer_set::RotamerSetsOP	rotamersets ()
core::pack::interaction_graph::InteractionGraphBaseOP	ig ()

Private Member Functions
	PackingState (PackingState const &other_state)

Private Attributes
core::pack::task::PackerTaskCOP	ptask_p_
core::pack::rotamer_set::RotamerSetsOP	rotamersets_p_
core::pack::interaction_graph::InteractionGraphBaseOP	ig_p_

Detailed Description

Definition at line 35 of file PackingState.hh.

Constructor & Destructor Documentation

protocols::multistate_design::PackingState::PackingState

(

)

Definition at line 41 of file PackingState.cc.

protocols::multistate_design::PackingState::PackingState	(	core::pose::Pose const &	pose_in,
		bool	is_positive
	)

Definition at line 48 of file PackingState.cc.

protocols::multistate_design::PackingState::~PackingState ( )

virtual

Definition at line 55 of file PackingState.cc.

protocols::multistate_design::PackingState::PackingState ( PackingState const &  other_state)

private

Member Function Documentation

void protocols::multistate_design::PackingState::create_packer_data	(	core::scoring::ScoreFunctionCOP	scorefxn,
		core::pack::task::PackerTaskCOP	ptask
	)

Definition at line 65 of file PackingState.cc.

References ig_p_, protocols::multistate_design::SingleState::nonconst_pose(), core::pack::pack_rotamers_setup(), ptask(), ptask_p_, and rotamersets_p_.

InteractionGraphBaseCOP protocols::multistate_design::PackingState::ig

(

)

const

Definition at line 59 of file PackingState.cc.

References ig_p_.

Referenced by share_packer_data_from().

InteractionGraphBaseOP protocols::multistate_design::PackingState::ig ( )

protected

Definition at line 62 of file PackingState.cc.

References ig_p_.

PackerTaskCOP protocols::multistate_design::PackingState::ptask

(

)

const

Definition at line 57 of file PackingState.cc.

References ptask_p_.

Referenced by create_packer_data(), and share_packer_data_from().

RotamerSetsCOP protocols::multistate_design::PackingState::rotamersets

(

)

const

Definition at line 58 of file PackingState.cc.

References rotamersets_p_.

Referenced by protocols::multistate_design::limit_rotamer_set(), protocols::multistate_design::restrict_to_canonical_aas(), and share_packer_data_from().

RotamerSetsOP protocols::multistate_design::PackingState::rotamersets ( )

protected

Definition at line 61 of file PackingState.cc.

References rotamersets_p_.

void protocols::multistate_design::PackingState::run_packer

(

utility::vector0< int > const &

rot_to_pack)

Definition at line 86 of file PackingState.cc.

References ig_p_, protocols::multistate_design::SingleState::nonconst_pose(), core::pack::pack_rotamers_run(), ptask_p_, and rotamersets_p_.

void protocols::multistate_design::PackingState::share_packer_data_from

(

PackingState &

other)

Definition at line 77 of file PackingState.cc.

References ig(), ig_p_, ptask(), ptask_p_, rotamersets(), and rotamersets_p_.

Member Data Documentation

core::pack::interaction_graph::InteractionGraphBaseOP protocols::multistate_design::PackingState::ig_p_

private

Definition at line 65 of file PackingState.hh.

Referenced by create_packer_data(), ig(), run_packer(), and share_packer_data_from().

core::pack::task::PackerTaskCOP protocols::multistate_design::PackingState::ptask_p_

private

Definition at line 63 of file PackingState.hh.

Referenced by create_packer_data(), ptask(), run_packer(), and share_packer_data_from().

core::pack::rotamer_set::RotamerSetsOP protocols::multistate_design::PackingState::rotamersets_p_

private

Definition at line 64 of file PackingState.hh.

Referenced by create_packer_data(), rotamersets(), run_packer(), and share_packer_data_from().

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The documentation for this class was generated from the following files:

• src/protocols/multistate_design/PackingState.hh
• src/protocols/multistate_design/PackingState.cc