Splice.cc File Reference

#include <protocols/protein_interface_design/movers/Splice.hh>
#include <protocols/protein_interface_design/movers/SpliceSegment.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <protocols/protein_interface_design/movers/SpliceCreator.hh>
#include <utility/string_util.hh>
#include <utility/exit.hh>
#include <core/kinematics/FoldTree.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/chemical/AA.hh>
#include <protocols/protein_interface_design/filters/TorsionFilter.hh>
#include <protocols/protein_interface_design/util.hh>
#include <boost/foreach.hpp>
#include <protocols/toolbox/task_operations/RestrictChainToRepackingOperation.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/conformation/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/pack/task/TaskFactory.hh>
#include <basic/Tracer.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector1.hh>
#include <protocols/moves/DataMap.hh>
#include <protocols/moves/DataMapObj.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/selection.hh>
#include <protocols/protein_interface_design/movers/AddChainBreak.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <iostream>
#include <sstream>
#include <algorithm>
#include <core/conformation/Residue.hh>
#include <core/chemical/VariantType.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/toolbox/task_operations/DesignAroundOperation.hh>
#include <protocols/toolbox/task_operations/ProteinInterfaceDesignOperation.hh>
#include <protocols/toolbox/task_operations/ThreadSequenceOperation.hh>
#include <protocols/loops/loop_mover/refine/LoopMover_CCD.hh>
#include <numeric/xyzVector.hh>
#include <protocols/loops/FoldTreeFromLoopsWrapper.hh>
#include <protocols/protein_interface_design/movers/LoopLengthChange.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/SequenceProfileConstraint.hh>
#include <core/sequence/SequenceProfile.hh>
#include <fstream>
#include <ctime>

Go to the source code of this file.

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::protein_interface_design
	protocols::protein_interface_design::movers

Constant Groups
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::protein_interface_design
	protocols::protein_interface_design::movers

Macros
#define	foreach   BOOST_FOREACH

Functions
static basic::Tracer	protocols::protein_interface_design::movers::TR ("protocols.protein_interface_design.movers.Splice")
static basic::Tracer	protocols::protein_interface_design::movers::TR_ccd ("protocols.protein_interface_design.movers.Splice_ccd")
static numeric::random::RandomGenerator	protocols::protein_interface_design::movers::RG (78289)
void	protocols::protein_interface_design::movers::copy_stretch (core::pose::Pose &target, core::pose::Pose const &source, core::Size const from_res, core::Size const to_res)
	copy a stretch of aligned phi-psi dofs from source to target. No repacking no nothing. The core function, copy_segment, copies residues from the source to the target without aligning the residues, thereby delivering all of their dofs More...
utility::vector1< core::Size >	protocols::protein_interface_design::movers::find_residues_on_chain1_outside_interface (core::pose::Pose const &pose)

Detailed Description

Author

Sarel Fleishman (sarel.nosp@m.f@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Sarel Fleishman (sarel.nosp@m.@wei.nosp@m.zmann.nosp@m..ac..nosp@m.il)

Definition in file Splice.cc.

Macro Definition Documentation

#define foreach   BOOST_FOREACH

Definition at line 31 of file Splice.cc.