core::scoring::etable::count_pair::CountPairIntraResC4 Class Reference

#include <CountPairIntraResC4.hh>

Inheritance diagram for core::scoring::etable::count_pair::CountPairIntraResC4:

Collaboration diagram for core::scoring::etable::count_pair::CountPairIntraResC4:

Public Types
typedef CountPairCrossover4	parent
Public Types inherited from core::scoring::etable::count_pair::CountPairCrossover4
typedef CountPairFunction	parent

Public Member Functions
	CountPairIntraResC4 (conformation::Residue const &res1)
	take a row from the path distances table to retrieve the lower and upper path distances for all atoms in each residue More...
virtual	~CountPairIntraResC4 ()
bool	operator() (int const at1, int const at2, Real &weight, Size &path_dist) const
	function required by templated functions in atom_pair_energy_inline More...
virtual bool	count (int const at1, int const at2, Real &, Size &path_dist) const
virtual void	residue_atom_pair_energy (conformation::Residue const &res1, conformation::Residue const &res2, etable::TableLookupEvaluator const &, EnergyMap &) const
	Type Resolution Functions ///. More...
virtual void	residue_atom_pair_energy_sidechain_backbone (conformation::Residue const &, conformation::Residue const &, etable::TableLookupEvaluator const &, EnergyMap &) const
virtual void	residue_atom_pair_energy_sidechain_whole (conformation::Residue const &, conformation::Residue const &, etable::TableLookupEvaluator const &, EnergyMap &) const
virtual void	residue_atom_pair_energy (conformation::Residue const &res1, conformation::Residue const &res2, etable::AnalyticEtableEvaluator const &, EnergyMap &) const
virtual void	residue_atom_pair_energy_sidechain_backbone (conformation::Residue const &, conformation::Residue const &, etable::AnalyticEtableEvaluator const &, EnergyMap &) const
virtual void	residue_atom_pair_energy_sidechain_whole (conformation::Residue const &, conformation::Residue const &, etable::AnalyticEtableEvaluator const &, EnergyMap &) const
Public Member Functions inherited from core::scoring::etable::count_pair::CountPairCrossover4
virtual	~CountPairCrossover4 ()
	virtual destructor More...
Public Member Functions inherited from core::scoring::etable::count_pair::CountPairFunction
	CountPairFunction ()
virtual	~CountPairFunction ()
bool	operator() (int const at1, int const at2, Real &, Size &path_dist) const
virtual void	residue_atom_pair_energy_backbone_backbone (conformation::Residue const &, conformation::Residue const &, etable::TableLookupEvaluator const &, EnergyMap &) const =0
virtual void	residue_atom_pair_energy_sidechain_sidechain (conformation::Residue const &, conformation::Residue const &, etable::TableLookupEvaluator const &, EnergyMap &) const =0
virtual void	residue_atom_pair_energy_backbone_backbone (conformation::Residue const &, conformation::Residue const &, etable::AnalyticEtableEvaluator const &, EnergyMap &) const =0
virtual void	residue_atom_pair_energy_sidechain_sidechain (conformation::Residue const &, conformation::Residue const &, etable::AnalyticEtableEvaluator const &, EnergyMap &) const =0

Private Attributes
utility::vector1 < utility::vector1< int > > const &	path_dists_

Additional Inherited Members
Static Public Member Functions inherited from core::scoring::etable::count_pair::CountPairCrossover4
static bool	count_at_path_distance (Size const path_distance, Real &weight)
	function used by derived classes and associated classes (like the trie's count pair hierarchy) More...
Static Public Attributes inherited from core::scoring::etable::count_pair::CountPairFunction
static Real const	cp_half

Detailed Description

Definition at line 29 of file CountPairIntraResC4.hh.

Member Typedef Documentation

typedef CountPairCrossover4 core::scoring::etable::count_pair::CountPairIntraResC4::parent

Definition at line 33 of file CountPairIntraResC4.hh.

Constructor & Destructor Documentation

core::scoring::etable::count_pair::CountPairIntraResC4::CountPairIntraResC4

(

conformation::Residue const &

res1)

take a row from the path distances table to retrieve the lower and upper path distances for all atoms in each residue

Definition at line 30 of file CountPairIntraResC4.cc.

core::scoring::etable::count_pair::CountPairIntraResC4::~CountPairIntraResC4 ( )

virtual

Definition at line 38 of file CountPairIntraResC4.cc.

Member Function Documentation

bool core::scoring::etable::count_pair::CountPairIntraResC4::count ( int const  at1, int const  at2, Real &  w, Size &  path_dist  ) const

virtual

Implements core::scoring::etable::count_pair::CountPairFunction.

Definition at line 41 of file CountPairIntraResC4.cc.

References operator()().

bool core::scoring::etable::count_pair::CountPairIntraResC4::operator() ( int const  at1, int const  at2, Real &  weight, Size &  path_dist  ) const

inline

function required by templated functions in atom_pair_energy_inline

Definition at line 45 of file CountPairIntraResC4.hh.

References core::scoring::etable::count_pair::CountPairCrossover4::count_at_path_distance(), and path_dists_.

Referenced by count().

void core::scoring::etable::count_pair::CountPairIntraResC4::residue_atom_pair_energy ( conformation::Residue const &  res1, conformation::Residue const &  res2, etable::TableLookupEvaluator const &  etable_energy, EnergyMap &  emap  ) const

virtual

Type Resolution Functions ///.

Implements core::scoring::etable::count_pair::CountPairFunction.

Definition at line 53 of file CountPairIntraResC4.cc.

References core::scoring::inline_intraresidue_atom_pair_energy().

void core::scoring::etable::count_pair::CountPairIntraResC4::residue_atom_pair_energy ( conformation::Residue const &  res1, conformation::Residue const &  res2, etable::AnalyticEtableEvaluator const &  etable_energy, EnergyMap &  emap  ) const

virtual

Implements core::scoring::etable::count_pair::CountPairFunction.

Definition at line 90 of file CountPairIntraResC4.cc.

References core::scoring::inline_intraresidue_atom_pair_energy().

void core::scoring::etable::count_pair::CountPairIntraResC4::residue_atom_pair_energy_sidechain_backbone ( conformation::Residue const &  , conformation::Residue const &  , etable::TableLookupEvaluator const &  , EnergyMap &    ) const

virtual

Implements core::scoring::etable::count_pair::CountPairFunction.

Definition at line 65 of file CountPairIntraResC4.cc.

void core::scoring::etable::count_pair::CountPairIntraResC4::residue_atom_pair_energy_sidechain_backbone ( conformation::Residue const &  res1, conformation::Residue const &  res2, etable::AnalyticEtableEvaluator const &  etable_energy, EnergyMap &  emap  ) const

virtual

Implements core::scoring::etable::count_pair::CountPairFunction.

Definition at line 102 of file CountPairIntraResC4.cc.

void core::scoring::etable::count_pair::CountPairIntraResC4::residue_atom_pair_energy_sidechain_whole ( conformation::Residue const &  , conformation::Residue const &  , etable::TableLookupEvaluator const &  , EnergyMap &    ) const

virtual

Implements core::scoring::etable::count_pair::CountPairFunction.

Definition at line 78 of file CountPairIntraResC4.cc.

void core::scoring::etable::count_pair::CountPairIntraResC4::residue_atom_pair_energy_sidechain_whole ( conformation::Residue const &  , conformation::Residue const &  , etable::AnalyticEtableEvaluator const &  , EnergyMap &    ) const

virtual

Implements core::scoring::etable::count_pair::CountPairFunction.

Definition at line 115 of file CountPairIntraResC4.cc.

Member Data Documentation

utility::vector1< utility::vector1< int > > const& core::scoring::etable::count_pair::CountPairIntraResC4::path_dists_

private

Definition at line 126 of file CountPairIntraResC4.hh.

Referenced by operator()().

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The documentation for this class was generated from the following files:

• src/core/scoring/etable/count_pair/CountPairIntraResC4.hh
• src/core/scoring/etable/count_pair/CountPairIntraResC4.cc