#include <Sheet.hh>

Inheritance diagram for protocols::fldsgn::topology::Sheet:

Collaboration diagram for protocols::fldsgn::topology::Sheet:

Public Types
typedef core::Size	Size

typedef core::Real	Real

typedef core::Vector	Vector

typedef core::pose::Pose	Pose

typedef utility::vector1< Size >	VecSize

typedef utility::vector1< int >	VecInt

typedef utility::vector1< Real >	VecReal

typedef protocols::fldsgn::topology::SS_Info2_COP	SS_Info2_COP

Public Member Functions
	Sheet ()
	default constructor More...

	Sheet (VecSize const &order_strands, VecInt const &orient_strands, bool is_barrel)
	value constructor More...

	Sheet (Sheet const &s)
	copy constructor More...

virtual	~Sheet ()
	default destructor More...

SheetOP	clone ()
	clone this object More...

void	initialize ()
	intialize this class More...

Size	num_strands () const
	the number strands inclued in More...

bool	is_barrel () const
	is this barrel ? More...

VecSize	order_strands () const

Size	order_strand (Size const s) const

VecInt	orient_strands () const

int	orient_strand (Size const s) const

Size	strand_order (Size const s)

VecInt	ca_cb_orients () const

int	ca_cb_orient (Size const s) const

int	which_side (Vector const vec) const

utility::vector1< Real >	calc_sasa_bothsides (Pose const &pose, SS_Info2_COP const ssinfo, Real pore_radius=1.5)
	calc surface areas only with beta-sheet More...

void	calc_geometry (SS_Info2_COP const ssinfo)
	calc geometry of sheet, sheet_plane_, sheet_center_, ca_cb_orients_ More...

bool	is_member (Size const s)
	whether the given strand number belongs to this sheet or not More...

Private Attributes
Size	num_strands_

bool	is_barrel_

VecSize	order_strands_
	order of strand in sheet -> id of strand More...

VecInt	orient_strands_
	order of strand in sheet -> id of strand More...

std::map< Size, Size >	strand_order_
	id of strand -> order of strand in sheet More...

Vector	sheet_plane_
	vector defining sheet plane More...

Vector	sheet_center_
	"center" of sheet More...

VecInt	ca_cb_orients_

bool	is_geometry_initialized_
	geometries was calculated or not More...

Friends
std::ostream &	operator<< (std::ostream &out, const Sheet &s)
	return strand pairing More...

Detailed Description

Definition at line 39 of file Sheet.hh.

Member Typedef Documentation

typedef core::pose::Pose protocols::fldsgn::topology::Sheet::Pose

Definition at line 46 of file Sheet.hh.

typedef core::Real protocols::fldsgn::topology::Sheet::Real

Definition at line 44 of file Sheet.hh.

typedef core::Size protocols::fldsgn::topology::Sheet::Size

Definition at line 43 of file Sheet.hh.

typedef protocols::fldsgn::topology::SS_Info2_COP protocols::fldsgn::topology::Sheet::SS_Info2_COP

Definition at line 50 of file Sheet.hh.

typedef utility::vector1< int > protocols::fldsgn::topology::Sheet::VecInt

Definition at line 48 of file Sheet.hh.

typedef utility::vector1< Real > protocols::fldsgn::topology::Sheet::VecReal

Definition at line 49 of file Sheet.hh.

typedef utility::vector1< Size > protocols::fldsgn::topology::Sheet::VecSize

Definition at line 47 of file Sheet.hh.

typedef core::Vector protocols::fldsgn::topology::Sheet::Vector

Definition at line 45 of file Sheet.hh.

Constructor & Destructor Documentation

protocols::fldsgn::topology::Sheet::Sheet ( )

default constructor

Definition at line 55 of file Sheet.cc.

References initialize().

Referenced by clone().

protocols::fldsgn::topology::Sheet::Sheet	(	VecSize const &	order_strands,
		VecInt const &	orient_strands,
		bool	is_barrel
	)

value constructor

Definition at line 64 of file Sheet.cc.

References initialize().

protocols::fldsgn::topology::Sheet::Sheet ( Sheet const & s)

copy constructor

Definition at line 76 of file Sheet.cc.

protocols::fldsgn::topology::Sheet::~Sheet ( )

virtual

default destructor

Definition at line 100 of file Sheet.cc.

Member Function Documentation

int protocols::fldsgn::topology::Sheet::ca_cb_orient ( Size const s) const

inline

Definition at line 106 of file Sheet.hh.

References ca_cb_orients_.

Referenced by calc_sasa_bothsides().

VecInt protocols::fldsgn::topology::Sheet::ca_cb_orients ( ) const

inline

Definition at line 104 of file Sheet.hh.

References ca_cb_orients_.

void protocols::fldsgn::topology::Sheet::calc_geometry ( SS_Info2_COP const ssinfo)

calc geometry of sheet, sheet_plane_, sheet_center_, ca_cb_orients_

calc geometry

Definition at line 178 of file Sheet.cc.

References ca_cb_orients_, core::sequence::end, is_geometry_initialized_, num_strands_, order_strands_, orient_strands_, sheet_center_, and sheet_plane_.

utility::vector1< Real > protocols::fldsgn::topology::Sheet::calc_sasa_bothsides	(	Pose const &	pose,
		SS_Info2_COP const	ssinfo,
		Real	pore_radius = `1.5`
	)