SymDockBaseProtocol.cc

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// This file is part of the Rosetta software suite and is made available under license.
// The Rosetta software is developed by the contributing members of the Rosetta Commons consortium.
// (C) 199x-2009 Rosetta Commons participating institutions and developers.
// For more information, see http://www.rosettacommons.org/.

/// @file   protocols/symmetric_docking/SymDataBaseProtocol.cc
///
/// @brief
/// @author Ingemar Andre


#include <protocols/symmetric_docking/SymDockBaseProtocol.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
// AUTO-REMOVED #include <core/conformation/symmetry/SymmData.hh>

// AUTO-REMOVED #include <basic/options/option.hh>

#include <basic/Tracer.hh>

// AUTO-REMOVED #include <numeric/random/random.hh>

#include <utility/vector1.hh>
#include <basic/options/keys/OptionKeys.hh>


namespace protocols {
namespace symmetric_docking {

static basic::Tracer TR("protocols.symmetric_docking.SymDockBaseProtocol");
//static numeric::random::RandomGenerator my_RG(85000); // <- Magic number, do not change it!!! Need to find out wgat to use here!!!!!!

SymDockBaseProtocol::SymDockBaseProtocol() :
  Mover()
{
  Mover::type( "SymDockBaseProtocol" );

  using namespace basic::options;
  using namespace core::scoring;
//  if ( option[ OptionKeys::docking::symmetry::symm_definition ].user() ) {
//    symm_definition_file_ = option[ OptionKeys::docking::symmetry::symm_definition ];
//  } else {
//    utility_exit_with_message("Need to give symmetry definition file...") ;
//  }
  std::string symm_definition_file_ = "symm_def5.dat";
  // Set up scoring functions
//  symmetry::SymmetricScoreFunction scorefxn_sym_lowres ( ScoreFunctionFactory::create_score_function( "interchain_cen" ) );
//  symmetry::SymmetricScoreFunction scorefxn_sym_highres ( core::scoring::STANDARD_WTS, core::scoring::DOCK_PATCH );
//  scorefxn_lowres_ = new symmetry::SymmetricScoreFunction( scorefxn_sym_lowres );
//  scorefxn_hires_ = new symmetry::SymmetricScoreFunction( scorefxn_sym_highres );
    scorefxn_lowres_ = ScoreFunctionFactory::create_score_function( "interchain_cen" );
    scorefxn_hires_ =  ScoreFunctionFactory::create_score_function( core::scoring::STANDARD_WTS, core::scoring::DOCK_PATCH );

}

SymDockBaseProtocol::~SymDockBaseProtocol() {}

std::string
SymDockBaseProtocol::get_name() const {
  return "SymDockBaseProtocol";
}

} // symmetric_docking
} // protocols