core::scoring::Strands Struct Reference

#include <SS_Info.hh>

Collaboration diagram for core::scoring::Strands:

Public Types
typedef ObjexxFCL::FArray1D< int >	FArray1D_int
typedef ObjexxFCL::FArray2D< int >	FArray2D_int

Public Member Functions
	Strands ()
	default constructor More...
	Strands (int const &total_residue)
	total residue constructor More...
	Strands (Strands const &s)
	copy constructor More...
	~Strands ()
	default destructor More...
void	resize (Size const nres)
void	clear ()
Strands const &	operator= (Strands const &s)
	copy assignment More...

Public Attributes
int	total_SS_dimer
	number of strand dimers More...
FArray1D_int	SS_resnum
	residue number of strand dimer i More...
int	total_strands
	number of strands More...
FArray1D_int	SS_strand
	strand number containing SS_dimer i More...
FArray1D_int	SS_dimer
	dimer number starting with position i More...
FArray2D_int	SS_strand_end
	residue number of first non-E res More...
FArray2D_int	dimer_neighbor
	two neighbors, used for determining sheets More...

Friends
std::ostream &	operator<< (std::ostream &out, Strands const &s)

Detailed Description

Definition at line 123 of file SS_Info.hh.

Member Typedef Documentation

typedef ObjexxFCL::FArray1D< int > core::scoring::Strands::FArray1D_int

Definition at line 125 of file SS_Info.hh.

typedef ObjexxFCL::FArray2D< int > core::scoring::Strands::FArray2D_int

Definition at line 126 of file SS_Info.hh.

Constructor & Destructor Documentation

core::scoring::Strands::Strands

(

)

default constructor

Definition at line 145 of file SS_Info.cc.

core::scoring::Strands::Strands

(

int const &

total_residue)

total residue constructor

Definition at line 149 of file SS_Info.cc.

References resize().

core::scoring::Strands::Strands

(

Strands const &

s)

copy constructor

Definition at line 157 of file SS_Info.cc.

core::scoring::Strands::~Strands

(

)

default destructor

Definition at line 170 of file SS_Info.cc.

Member Function Documentation

void core::scoring::Strands::clear

(

)

Definition at line 186 of file SS_Info.cc.

References dimer_neighbor, SS_dimer, SS_resnum, SS_strand, and SS_strand_end.

Referenced by resize().

Strands const & core::scoring::Strands::operator=

(

Strands const &

s)

copy assignment

Definition at line 196 of file SS_Info.cc.

References dimer_neighbor, SS_dimer, SS_resnum, SS_strand, SS_strand_end, total_SS_dimer, and total_strands.

void core::scoring::Strands::resize

(

Size const

nres)

Definition at line 175 of file SS_Info.cc.

References clear(), dimer_neighbor, SS_dimer, SS_resnum, SS_strand, and SS_strand_end.

Referenced by core::scoring::SS_Info::resize(), and Strands().

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out, Strands const &  s  )

friend

Definition at line 213 of file SS_Info.cc.

Member Data Documentation

FArray2D_int core::scoring::Strands::dimer_neighbor

mutable

two neighbors, used for determining sheets

Definition at line 177 of file SS_Info.hh.

Referenced by clear(), operator=(), and resize().

FArray1D_int core::scoring::Strands::SS_dimer

dimer number starting with position i

Definition at line 171 of file SS_Info.hh.

Referenced by clear(), core::scoring::SecondaryStructurePotential::identify_ss(), core::scoring::operator<<(), operator=(), and resize().

FArray1D_int core::scoring::Strands::SS_resnum

residue number of strand dimer i

Definition at line 162 of file SS_Info.hh.

Referenced by clear(), core::scoring::SecondaryStructurePotential::identify_ss(), core::scoring::operator<<(), operator=(), and resize().

FArray1D_int core::scoring::Strands::SS_strand

strand number containing SS_dimer i

Definition at line 168 of file SS_Info.hh.

Referenced by clear(), core::scoring::SecondaryStructurePotential::identify_ss(), core::scoring::operator<<(), operator=(), and resize().

FArray2D_int core::scoring::Strands::SS_strand_end

residue number of first non-E res

Definition at line 174 of file SS_Info.hh.

Referenced by clear(), protocols::flxbb::constraints_sheet(), core::scoring::SecondaryStructurePotential::identify_ss(), core::scoring::operator<<(), operator=(), and resize().

int core::scoring::Strands::total_SS_dimer

number of strand dimers

Definition at line 159 of file SS_Info.hh.

Referenced by core::scoring::SecondaryStructurePotential::identify_ss(), core::scoring::operator<<(), and operator=().

int core::scoring::Strands::total_strands

number of strands

Definition at line 165 of file SS_Info.hh.

Referenced by protocols::flxbb::constraints_sheet(), core::scoring::SecondaryStructurePotential::identify_ss(), core::scoring::operator<<(), and operator=().

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The documentation for this struct was generated from the following files:

• src/core/scoring/SS_Info.hh
• src/core/scoring/SS_Info.cc