#include <PackStatFilter.hh>

Inheritance diagram for protocols::simple_filters::PackStatFilter:

Collaboration diagram for protocols::simple_filters::PackStatFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef protocols::filters::FilterOP	FilterOP

typedef core::Real	Real

typedef core::pose::Pose	Pose

typedef utility::tag::TagPtr	TagPtr

typedef protocols::filters::Filters_map	Filters_map

typedef protocols::moves::DataMap	DataMap

typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	PackStatFilter ()
	default constructor More...

	PackStatFilter (Real const &ss)
	constructor with arguments More...

	PackStatFilter (PackStatFilter const &rval)
	copy constructor More...

virtual	~PackStatFilter ()

virtual filters::FilterOP	clone () const
	make clone More...

virtual filters::FilterOP	fresh_instance () const
	make fresh instance More...

void	filtered_score (Real const &ss)
	set filtered secondary structure More...

virtual std::string	name () const
	get name of this filter More...

virtual void	parse_my_tag (TagPtr const tag, DataMap &, filters::Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...

virtual bool	apply (Pose const &pose) const
	returns true if the given pose passes the filter, false otherwise. In this case, the test is whether the give pose is the topology we want. More...

virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...

Real	compute (Pose const &pose) const
	calc packstat score More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Public Attributes
core::Size	chain_
	determine which chain to evaluate, 0 is all More...

core::Size	repeats_
	how many times to repeat evaluation More...

Private Attributes
Real	filtered_score_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 44 of file PackStatFilter.hh.

Member Typedef Documentation

typedef protocols::moves::DataMap protocols::simple_filters::PackStatFilter::DataMap

Definition at line 55 of file PackStatFilter.hh.

typedef protocols::filters::Filter protocols::simple_filters::PackStatFilter::Filter

Definition at line 48 of file PackStatFilter.hh.

typedef protocols::filters::FilterOP protocols::simple_filters::PackStatFilter::FilterOP

Definition at line 49 of file PackStatFilter.hh.

typedef protocols::filters::Filters_map protocols::simple_filters::PackStatFilter::Filters_map

Definition at line 54 of file PackStatFilter.hh.

typedef protocols::moves::Movers_map protocols::simple_filters::PackStatFilter::Movers_map

Definition at line 56 of file PackStatFilter.hh.

typedef core::pose::Pose protocols::simple_filters::PackStatFilter::Pose

Definition at line 51 of file PackStatFilter.hh.

typedef core::Real protocols::simple_filters::PackStatFilter::Real

Definition at line 50 of file PackStatFilter.hh.

typedef protocols::filters::Filter protocols::simple_filters::PackStatFilter::Super

Definition at line 47 of file PackStatFilter.hh.

typedef utility::tag::TagPtr protocols::simple_filters::PackStatFilter::TagPtr

Definition at line 53 of file PackStatFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::PackStatFilter::PackStatFilter ( )

default constructor

Definition at line 44 of file PackStatFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::PackStatFilter::PackStatFilter ( Real const & ss)

constructor with arguments

Definition at line 54 of file PackStatFilter.cc.

protocols::simple_filters::PackStatFilter::PackStatFilter ( PackStatFilter const & rval)

copy constructor

Definition at line 62 of file PackStatFilter.cc.

virtual protocols::simple_filters::PackStatFilter::~PackStatFilter ( )

inlinevirtual

Definition at line 71 of file PackStatFilter.hh.

Member Function Documentation

bool protocols::simple_filters::PackStatFilter::apply ( Pose const & pose) const

virtual

returns true if the given pose passes the filter, false otherwise. In this case, the test is whether the give pose is the topology we want.

Implements protocols::filters::Filter.

Definition at line 109 of file PackStatFilter.cc.

References compute(), filtered_score_, protocols::filters::Filter::score(), and protocols::simple_filters::tr().

virtual filters::FilterOP protocols::simple_filters::PackStatFilter::clone ( ) const

inlinevirtual

make clone

Implements protocols::filters::Filter.

Definition at line 78 of file PackStatFilter.hh.

References PackStatFilter().

PackStatFilter::Real protocols::simple_filters::PackStatFilter::compute ( Pose const & pose) const

calc packstat score

Definition at line 78 of file PackStatFilter.cc.

References chain_, core::scoring::packstat::compute_packing_score(), repeats_, core::pose::Pose::split_by_chain(), and protocols::simple_filters::tr().

Referenced by apply(), and report_sm().

void protocols::simple_filters::PackStatFilter::filtered_score ( Real const & ss)

set filtered secondary structure

Definition at line 71 of file PackStatFilter.cc.

References filtered_score_, and protocols::filters::Filter::score().

virtual filters::FilterOP protocols::simple_filters::PackStatFilter::fresh_instance ( ) const

inlinevirtual

make fresh instance

Implements protocols::filters::Filter.

Definition at line 81 of file PackStatFilter.hh.

References PackStatFilter().

virtual std::string protocols::simple_filters::PackStatFilter::name ( ) const

inlinevirtual

get name of this filter

Reimplemented from protocols::filters::Filter.

Definition at line 95 of file PackStatFilter.hh.

void protocols::simple_filters::PackStatFilter::parse_my_tag	(	TagPtr const	tag,
		DataMap &	,
		filters::Filters_map const &	,
		Movers_map const &	,
		Pose const &
	)