core::scoring::disulfides::DisulfResNeighbIterator Class Reference

#include <FullatomDisulfideEnergyContainer.hh>

Inheritance diagram for core::scoring::disulfides::DisulfResNeighbIterator:

Collaboration diagram for core::scoring::disulfides::DisulfResNeighbIterator:

Public Member Functions
	DisulfResNeighbIterator (FullatomDisulfideEnergyContainerAP owner, Size focused_node, Size disulfide_index)
	DisulfResNeighbIterator (FullatomDisulfideEnergyContainerAP owner)
virtual	~DisulfResNeighbIterator ()
virtual ResidueNeighborIterator const &	operator= (ResidueNeighborIterator const &)
virtual ResidueNeighborIterator const &	operator++ ()
virtual bool	operator== (ResidueNeighborIterator const &) const
virtual bool	operator!= (ResidueNeighborIterator const &) const
virtual Size	upper_neighbor_id () const
virtual Size	lower_neighbor_id () const
virtual Size	residue_iterated_on () const
virtual Size	neighbor_id () const
virtual void	save_energy (EnergyMap const &)
virtual void	retrieve_energy (EnergyMap &) const
virtual void	accumulate_energy (EnergyMap &) const
virtual void	mark_energy_computed ()
virtual void	mark_energy_uncomputed ()
virtual bool	energy_computed () const
Public Member Functions inherited from core::scoring::ResidueNeighborIterator
virtual	~ResidueNeighborIterator ()

Private Attributes
FullatomDisulfideEnergyContainerAP	owner_
Size	focused_residue_
Size	disulfide_index_

Detailed Description

Definition at line 42 of file FullatomDisulfideEnergyContainer.hh.

Constructor & Destructor Documentation

core::scoring::disulfides::DisulfResNeighbIterator::DisulfResNeighbIterator	(	FullatomDisulfideEnergyContainerAP	owner,
		Size	focused_node,
		Size	disulfide_index
	)

Definition at line 39 of file FullatomDisulfideEnergyContainer.cc.

core::scoring::disulfides::DisulfResNeighbIterator::DisulfResNeighbIterator

(

FullatomDisulfideEnergyContainerAP

owner)

Definition at line 49 of file FullatomDisulfideEnergyContainer.cc.

core::scoring::disulfides::DisulfResNeighbIterator::~DisulfResNeighbIterator ( )

virtual

Definition at line 57 of file FullatomDisulfideEnergyContainer.cc.

Member Function Documentation

void core::scoring::disulfides::DisulfResNeighbIterator::accumulate_energy ( EnergyMap &  emap) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 149 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE, and owner_.

bool core::scoring::disulfides::DisulfResNeighbIterator::energy_computed ( ) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 169 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE, and owner_.

Size core::scoring::disulfides::DisulfResNeighbIterator::lower_neighbor_id ( ) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 113 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE, and owner_.

void core::scoring::disulfides::DisulfResNeighbIterator::mark_energy_computed ( )

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 155 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE, and owner_.

void core::scoring::disulfides::DisulfResNeighbIterator::mark_energy_uncomputed ( )

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 161 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE, and owner_.

Size core::scoring::disulfides::DisulfResNeighbIterator::neighbor_id ( ) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 126 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, focused_residue_, and owner_.

bool core::scoring::disulfides::DisulfResNeighbIterator::operator!= ( ResidueNeighborIterator const &  rhs) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 95 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, focused_residue_, and owner_.

ResidueNeighborIterator const & core::scoring::disulfides::DisulfResNeighbIterator::operator++ ( )

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 75 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, focused_residue_, and core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE.

ResidueNeighborIterator const & core::scoring::disulfides::DisulfResNeighbIterator::operator= ( ResidueNeighborIterator const &  rhs)

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 61 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, focused_residue_, and owner_.

bool core::scoring::disulfides::DisulfResNeighbIterator::operator== ( ResidueNeighborIterator const &  rhs) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 84 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, focused_residue_, and owner_.

Size core::scoring::disulfides::DisulfResNeighbIterator::residue_iterated_on ( ) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 120 of file FullatomDisulfideEnergyContainer.cc.

References focused_residue_.

void core::scoring::disulfides::DisulfResNeighbIterator::retrieve_energy ( EnergyMap &  emap) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 141 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE, and owner_.

void core::scoring::disulfides::DisulfResNeighbIterator::save_energy ( EnergyMap const &  emap)

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 133 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE, and owner_.

Size core::scoring::disulfides::DisulfResNeighbIterator::upper_neighbor_id ( ) const

virtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 106 of file FullatomDisulfideEnergyContainer.cc.

References disulfide_index_, core::scoring::disulfides::FullatomDisulfideEnergyContainer::NO_DISULFIDE, and owner_.

Member Data Documentation

Size core::scoring::disulfides::DisulfResNeighbIterator::disulfide_index_

private

Definition at line 80 of file FullatomDisulfideEnergyContainer.hh.

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), neighbor_id(), operator!=(), operator++(), operator=(), operator==(), retrieve_energy(), save_energy(), and upper_neighbor_id().

Size core::scoring::disulfides::DisulfResNeighbIterator::focused_residue_

private

Definition at line 79 of file FullatomDisulfideEnergyContainer.hh.

Referenced by neighbor_id(), operator!=(), operator++(), operator=(), operator==(), and residue_iterated_on().

FullatomDisulfideEnergyContainerAP core::scoring::disulfides::DisulfResNeighbIterator::owner_

private

Definition at line 78 of file FullatomDisulfideEnergyContainer.hh.

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), neighbor_id(), operator!=(), operator=(), operator==(), retrieve_energy(), save_energy(), and upper_neighbor_id().

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The documentation for this class was generated from the following files:

• src/core/scoring/disulfides/FullatomDisulfideEnergyContainer.hh
• src/core/scoring/disulfides/FullatomDisulfideEnergyContainer.cc