protocols::nonlocal::Chunk Class Reference

#include <Chunk.hh>

Inheritance diagram for protocols::nonlocal::Chunk:

Collaboration diagram for protocols::nonlocal::Chunk:

Public Member Functions
	Chunk (const RegionOP &region, const MoveMapOP &movable)
	Default constructor <region> describes the contiguous stretch of residues. <movable> describes the modifiable degrees of freedom in the system. More...
	Chunk (const Chunk &other)
	Copy constructor. More...
virtual	~Chunk ()
	Destructor. More...
Chunk &	operator= (const Chunk &other)
	Assignment operator. More...
Size	choose () const
	Chooses an allowable insertion position on [start, stop] according to the probability distribution. More...
Size	start () const
	Lower boundary of this chunk. More...
Size	stop () const
	Upper boundary of this chunk. More...
Size	length () const
	Returns the length of this region. More...
bool	is_movable () const
	Returns true if at least one position on [start(), stop()] is movable. More...
bool	valid () const
	Returns true if there is at least one valid insertion position in the closed region [start(), stop()], false otherwise. More...

Private Types
typedef boost::math::normal	Normal
typedef core::Size	Size
typedef core::kinematics::MoveMapOP	MoveMapOP

Private Attributes
RegionOP	region_
MoveMapOP	movable_
boost::scoped_ptr < numeric::random::DistributionSampler < Normal > >	sampler_

Detailed Description

Definition at line 42 of file Chunk.hh.

Member Typedef Documentation

typedef core::kinematics::MoveMapOP protocols::nonlocal::Chunk::MoveMapOP

private

Definition at line 45 of file Chunk.hh.

typedef boost::math::normal protocols::nonlocal::Chunk::Normal

private

Definition at line 43 of file Chunk.hh.

typedef core::Size protocols::nonlocal::Chunk::Size

private

Definition at line 44 of file Chunk.hh.

Constructor & Destructor Documentation

protocols::nonlocal::Chunk::Chunk	(	const RegionOP &	region,
		const MoveMapOP &	movable
	)

Default constructor <region> describes the contiguous stretch of residues. <movable> describes the modifiable degrees of freedom in the system.

Definition at line 59 of file Chunk.cc.

References SALT, sampler_, SD_MULTIPLIER, start(), and stop().

protocols::nonlocal::Chunk::Chunk

(

const Chunk &

other)

Copy constructor.

Definition at line 74 of file Chunk.cc.

References sampler_.

protocols::nonlocal::Chunk::~Chunk ( )

virtual

Destructor.

Definition at line 39 of file Chunk.cc.

Member Function Documentation

Size protocols::nonlocal::Chunk::choose

(

)

const

Chooses an allowable insertion position on [start, stop] according to the probability distribution.

Definition at line 94 of file Chunk.cc.

References movable_, sampler_, start(), stop(), and valid().

Referenced by protocols::nonlocal::SingleFragmentMover::apply().

bool protocols::nonlocal::Chunk::is_movable

(

)

const

Returns true if at least one position on [start(), stop()] is movable.

Definition at line 123 of file Chunk.cc.

References movable_, start(), and stop().

Referenced by protocols::nonlocal::SingleFragmentMover::initialize_chunks(), and valid().

Size protocols::nonlocal::Chunk::length

(

)

const

Returns the length of this region.

Definition at line 117 of file Chunk.cc.

References region_.

Chunk & protocols::nonlocal::Chunk::operator=

(

const Chunk &

other)

Assignment operator.

Definition at line 80 of file Chunk.cc.

References movable_, region_, and sampler_.

Size protocols::nonlocal::Chunk::start

(

)

const

Lower boundary of this chunk.

Definition at line 109 of file Chunk.cc.

References region_.

Referenced by choose(), Chunk(), is_movable(), and valid().

Size protocols::nonlocal::Chunk::stop

(

)

const

Upper boundary of this chunk.

Definition at line 113 of file Chunk.cc.

References region_.

Referenced by choose(), Chunk(), is_movable(), and valid().

bool protocols::nonlocal::Chunk::valid

(

)

const

Returns true if there is at least one valid insertion position in the closed region [start(), stop()], false otherwise.

Definition at line 132 of file Chunk.cc.

References is_movable(), start(), and stop().

Referenced by choose().

Member Data Documentation

MoveMapOP protocols::nonlocal::Chunk::movable_

private

Definition at line 88 of file Chunk.hh.

Referenced by choose(), is_movable(), and operator=().

RegionOP protocols::nonlocal::Chunk::region_

private

Definition at line 87 of file Chunk.hh.

Referenced by length(), operator=(), start(), and stop().

boost::scoped_ptr<numeric::random::DistributionSampler<Normal> > protocols::nonlocal::Chunk::sampler_

private

Definition at line 89 of file Chunk.hh.

Referenced by choose(), Chunk(), and operator=().

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The documentation for this class was generated from the following files:

• src/protocols/nonlocal/Chunk.hh
• src/protocols/nonlocal/Chunk.cc