protocols::sic_dock::LinkerScore Class Reference

#include <RigidScore.hh>

Inheritance diagram for protocols::sic_dock::LinkerScore:

Collaboration diagram for protocols::sic_dock::LinkerScore:

Public Member Functions
	LinkerScore (Pose const &pose1, Pose const &pose2, Size max_loop_len, Size lookup_radius)
virtual	~LinkerScore ()
platform::Real	score (Stub const &x1, Stub const &x2) const
Public Member Functions inherited from protocols::sic_dock::RigidScore
virtual	~RigidScore ()

Private Attributes
protocols::loophash::LoopHashLibraryOP	loop_hash_library_
Sizes const	loopsizes_
platform::Size	lookup_radius_
Pose const &	pose1_
Pose const	pose2_
TermInfo	lowers1_
TermInfo	uppers1_
TermInfo	lowers2_
TermInfo	uppers2_
Real	max_dis2_

Additional Inherited Members
Protected Types inherited from protocols::sic_dock::RigidScore
typedef platform::Real	Real
typedef platform::Size	Size
typedef core::pose::Pose	Pose
typedef core::kinematics::Stub	Stub
typedef numeric::xyzVector< Real >	Vec
typedef numeric::xyzMatrix< Real >	Mat
typedef utility::vector1< Vec >	Vecs
typedef utility::vector1< Real >	Reals
typedef utility::vector1< Size >	Sizes
typedef utility::vector1< Stub >	Stubs
typedef utility::vector1 < RigidScoreCOP >	Scores

Detailed Description

Definition at line 80 of file RigidScore.hh.

Constructor & Destructor Documentation

protocols::sic_dock::LinkerScore::LinkerScore	(	Pose const &	pose1,
		Pose const &	pose2,
		Size	max_loop_len,
		Size	lookup_radius
	)

Definition at line 130 of file RigidScore.cc.

References protocols::sic_dock::get_termini_from_pose(), loop_hash_library_, loopsizes_, lowers1_, lowers2_, pose1_, pose2_, protocols::sic_dock::TR(), uppers1_, and uppers2_.

virtual protocols::sic_dock::LinkerScore::~LinkerScore ( )

inlinevirtual

Definition at line 88 of file RigidScore.hh.

Member Function Documentation

platform::Real protocols::sic_dock::LinkerScore::score ( Stub const &  x1, Stub const &  x2  ) const

virtual

Implements protocols::sic_dock::RigidScore.

Definition at line 160 of file RigidScore.cc.

References protocols::sic_dock::count_linkers(), protocols::sic_dock::dump_loophash_linkers(), core::pose::Pose::dump_pdb(), protocols::sic_dock::linker_count2score(), lookup_radius_, loop_hash_library_, loopsizes_, lowers1_, lowers2_, pose1_, pose2_, uppers1_, uppers2_, protocols::sic_dock::vec3_to_stub(), and protocols::sic_dock::xform_pose().

Member Data Documentation

platform::Size protocols::sic_dock::LinkerScore::lookup_radius_

private

Definition at line 94 of file RigidScore.hh.

Referenced by score().

protocols::loophash::LoopHashLibraryOP protocols::sic_dock::LinkerScore::loop_hash_library_

private

Definition at line 92 of file RigidScore.hh.

Referenced by LinkerScore(), and score().

Sizes const protocols::sic_dock::LinkerScore::loopsizes_

private

Definition at line 93 of file RigidScore.hh.

Referenced by LinkerScore(), and score().

TermInfo protocols::sic_dock::LinkerScore::lowers1_

private

Definition at line 96 of file RigidScore.hh.

Referenced by LinkerScore(), and score().

TermInfo protocols::sic_dock::LinkerScore::lowers2_

private

Definition at line 96 of file RigidScore.hh.

Referenced by LinkerScore(), and score().

Real protocols::sic_dock::LinkerScore::max_dis2_

private

Definition at line 97 of file RigidScore.hh.

Pose const& protocols::sic_dock::LinkerScore::pose1_

private

Definition at line 95 of file RigidScore.hh.

Referenced by LinkerScore(), and score().

Pose const protocols::sic_dock::LinkerScore::pose2_

private

Definition at line 95 of file RigidScore.hh.

Referenced by LinkerScore(), and score().

TermInfo protocols::sic_dock::LinkerScore::uppers1_

private

Definition at line 96 of file RigidScore.hh.

Referenced by LinkerScore(), and score().

TermInfo protocols::sic_dock::LinkerScore::uppers2_

private

Definition at line 96 of file RigidScore.hh.

Referenced by LinkerScore(), and score().

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The documentation for this class was generated from the following files:

• src/protocols/sic_dock/RigidScore.hh
• src/protocols/sic_dock/RigidScore.cc