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TrieCountPairAll.hh
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3 //
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9 
10 /// @file core/scoring/trie/trie_vs_trie.hh
11 /// @brief
12 /// @author Andrew Leaver-Fay (aleaverfay@gmail.com)
13 
14 #ifndef INCLUDED_core_scoring_etable_etrie_TrieCountPairAll_hh
15 #define INCLUDED_core_scoring_etable_etrie_TrieCountPairAll_hh
16 
17 // Unit Headers
18 #include <core/scoring/etable/etrie/TrieCountPairAll.fwd.hh>
19 
20 // Package Headers
21 #include <core/scoring/trie/TrieCountPairBase.hh>
22 #include <core/scoring/trie/RotamerTrie.fwd.hh>
23 
24 #include <core/scoring/etable/etrie/CountPairData_1_2.fwd.hh>
25 #include <core/scoring/etable/etrie/CountPairData_1_3.fwd.hh>
26 #include <core/scoring/etable/etrie/CountPairDataGeneric.fwd.hh>
27 //XRW_B_T1
28 //#include <core/scoring/etable/CoarseEtableEnergy.fwd.hh>
29 //XRW_E_T1
30 #include <core/scoring/methods/MMLJEnergyInter.fwd.hh>
31 
32 #include <core/scoring/hbonds/HBondEnergy.fwd.hh>
33 #include <core/scoring/hbonds/hbtrie/HBCPData.fwd.hh>
34 
35 
36 // ObjexxFLC Headers
37 #include <ObjexxFCL/FArray2D.fwd.hh>
38 
39 namespace core {
40 namespace scoring {
41 namespace etable {
42 namespace etrie {
43 
44 class TrieCountPairAll : public trie::TrieCountPairBase
45 {
46 public:
47 
48  TrieCountPairAll()
49  {}
50 
51  virtual ~TrieCountPairAll();
52  /// ------- USEFUL FUNCTIONS -------------///
53 
54  template < class CPDATA1, class CPDATA2 >
55  bool operator () ( CPDATA1 const & /*at1dat*/, CPDATA2 const & /*at2dat*/, Real & /*weight*/, Size & path_dist )
56  {
57  path_dist = INFINITE_SEPARATION;
58  return true;
59  }
60 
61  static
62  void
63  print();
64 
65  ///---------- TYPE RESOLUTION FUNCTIONS ----------///
66  virtual
67  void
68  resolve_trie_vs_trie(
69  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
70  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
71  etable::TableLookupEvaluator const & sfxn,
72  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
73  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
74 
75  virtual
76  void
77  resolve_trie_vs_trie(
78  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
79  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
80  etable::TableLookupEvaluator const & sfxn,
81  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
82  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
83 
84  virtual
85  void
86  resolve_trie_vs_trie(
87  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
88  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
89  etable::TableLookupEvaluator const & sfxn,
90  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
91  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
92 
93  virtual
94  void
95  resolve_trie_vs_trie(
96  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
97  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
98  etable::TableLookupEvaluator const & sfxn,
99  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
100  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
101 
102  virtual
103  void
104  resolve_trie_vs_trie(
105  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
106  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
107  etable::TableLookupEvaluator const & sfxn,
108  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
109  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
110 
111  virtual
112  void
113  resolve_trie_vs_trie(
114  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
115  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
116  etable::TableLookupEvaluator const & sfxn,
117  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
118  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
119 
120  virtual
121  void
122  resolve_trie_vs_trie(
123  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
124  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
125  etable::TableLookupEvaluator const & sfxn,
126  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
127  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
128 
129  virtual
130  void
131  resolve_trie_vs_trie(
132  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
133  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
134  etable::TableLookupEvaluator const & sfxn,
135  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
136  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
137 
138  virtual
139  void
140  resolve_trie_vs_trie(
141  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
142  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
143  etable::TableLookupEvaluator const & sfxn,
144  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
145  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
146 
147  virtual
148  void
149  resolve_trie_vs_trie(
150  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
151  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
152  etable::TableLookupEvaluator const & sfxn,
153  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
154  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
155 
156  virtual
157  void
158  resolve_trie_vs_trie(
159  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
160  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
161  etable::TableLookupEvaluator const & sfxn,
162  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
163  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
164 
165  virtual
166  void
167  resolve_trie_vs_trie(
168  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
169  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
170  etable::TableLookupEvaluator const & sfxn,
171  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
172  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
173 
174  virtual
175  void
176  resolve_trie_vs_trie(
177  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
178  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
179  etable::TableLookupEvaluator const & sfxn,
180  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
181  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
182 
183  virtual
184  void
185  resolve_trie_vs_trie(
186  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
187  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
188  etable::TableLookupEvaluator const & sfxn,
189  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
190  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
191 
192  virtual
193  void
194  resolve_trie_vs_trie(
195  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
196  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
197  etable::TableLookupEvaluator const & sfxn,
198  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
199  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
200 
201  virtual
202  void
203  resolve_trie_vs_trie(
204  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
205  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
206  etable::TableLookupEvaluator const & sfxn,
207  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
208  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
209 
210  virtual
211  void
212  resolve_trie_vs_path(
213  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
214  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
215  etable::TableLookupEvaluator const & sfxn,
216  utility::vector1< core::PackerEnergy > & pair_energy_vector,
217  utility::vector1< core::PackerEnergy > & temp_vector);
218 
219  virtual
220  void
221  resolve_trie_vs_path(
222  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
223  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
224  etable::TableLookupEvaluator const & sfxn,
225  utility::vector1< core::PackerEnergy > & pair_energy_vector,
226  utility::vector1< core::PackerEnergy > & temp_vector);
227 
228  virtual
229  void
230  resolve_trie_vs_path(
231  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
232  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
233  etable::TableLookupEvaluator const & sfxn,
234  utility::vector1< core::PackerEnergy > & pair_energy_vector,
235  utility::vector1< core::PackerEnergy > & temp_vector);
236 
237  virtual
238  void
239  resolve_trie_vs_path(
240  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
241  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
242  etable::TableLookupEvaluator const & sfxn,
243  utility::vector1< core::PackerEnergy > & pair_energy_vector,
244  utility::vector1< core::PackerEnergy > & temp_vector);
245 
246  virtual
247  void
248  resolve_trie_vs_path(
249  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
250  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
251  etable::TableLookupEvaluator const & sfxn,
252  utility::vector1< core::PackerEnergy > & pair_energy_vector,
253  utility::vector1< core::PackerEnergy > & temp_vector);
254 
255  virtual
256  void
257  resolve_trie_vs_path(
258  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
259  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
260  etable::TableLookupEvaluator const & sfxn,
261  utility::vector1< core::PackerEnergy > & pair_energy_vector,
262  utility::vector1< core::PackerEnergy > & temp_vector);
263 
264  virtual
265  void
266  resolve_trie_vs_path(
267  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
268  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
269  etable::TableLookupEvaluator const & sfxn,
270  utility::vector1< core::PackerEnergy > & pair_energy_vector,
271  utility::vector1< core::PackerEnergy > & temp_vector);
272 
273  virtual
274  void
275  resolve_trie_vs_path(
276  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
277  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
278  etable::TableLookupEvaluator const & sfxn,
279  utility::vector1< core::PackerEnergy > & pair_energy_vector,
280  utility::vector1< core::PackerEnergy > & temp_vector);
281 
282  virtual
283  void
284  resolve_trie_vs_path(
285  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
286  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
287  etable::TableLookupEvaluator const & sfxn,
288  utility::vector1< core::PackerEnergy > & pair_energy_vector,
289  utility::vector1< core::PackerEnergy > & temp_vector);
290 
291  virtual
292  void
293  resolve_trie_vs_path(
294  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
295  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
296  etable::TableLookupEvaluator const & sfxn,
297  utility::vector1< core::PackerEnergy > & pair_energy_vector,
298  utility::vector1< core::PackerEnergy > & temp_vector);
299 
300  virtual
301  void
302  resolve_trie_vs_path(
303  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
304  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
305  etable::TableLookupEvaluator const & sfxn,
306  utility::vector1< core::PackerEnergy > & pair_energy_vector,
307  utility::vector1< core::PackerEnergy > & temp_vector);
308 
309  virtual
310  void
311  resolve_trie_vs_path(
312  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
313  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
314  etable::TableLookupEvaluator const & sfxn,
315  utility::vector1< core::PackerEnergy > & pair_energy_vector,
316  utility::vector1< core::PackerEnergy > & temp_vector);
317 
318  virtual
319  void
320  resolve_trie_vs_path(
321  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
322  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
323  etable::TableLookupEvaluator const & sfxn,
324  utility::vector1< core::PackerEnergy > & pair_energy_vector,
325  utility::vector1< core::PackerEnergy > & temp_vector);
326 
327  virtual
328  void
329  resolve_trie_vs_path(
330  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
331  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
332  etable::TableLookupEvaluator const & sfxn,
333  utility::vector1< core::PackerEnergy > & pair_energy_vector,
334  utility::vector1< core::PackerEnergy > & temp_vector);
335 
336  virtual
337  void
338  resolve_trie_vs_path(
339  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
340  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
341  etable::TableLookupEvaluator const & sfxn,
342  utility::vector1< core::PackerEnergy > & pair_energy_vector,
343  utility::vector1< core::PackerEnergy > & temp_vector);
344 
345  virtual
346  void
347  resolve_trie_vs_path(
348  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
349  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
350  etable::TableLookupEvaluator const & sfxn,
351  utility::vector1< core::PackerEnergy > & pair_energy_vector,
352  utility::vector1< core::PackerEnergy > & temp_vector);
353 
354  ////////////////////////////////// EtableEnergy -- analytic evaluation ///////////////////////////////////
355  virtual
356  void
357  resolve_trie_vs_trie(
358  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
359  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
360  etable::AnalyticEtableEvaluator const & sfxn,
361  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
362  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
363 
364  virtual
365  void
366  resolve_trie_vs_trie(
367  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
368  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
369  etable::AnalyticEtableEvaluator const & sfxn,
370  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
371  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
372 
373  virtual
374  void
375  resolve_trie_vs_trie(
376  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
377  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
378  etable::AnalyticEtableEvaluator const & sfxn,
379  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
380  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
381 
382  virtual
383  void
384  resolve_trie_vs_trie(
385  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
386  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
387  etable::AnalyticEtableEvaluator const & sfxn,
388  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
389  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
390 
391  virtual
392  void
393  resolve_trie_vs_trie(
394  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
395  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
396  etable::AnalyticEtableEvaluator const & sfxn,
397  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
398  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
399 
400  virtual
401  void
402  resolve_trie_vs_trie(
403  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
404  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
405  etable::AnalyticEtableEvaluator const & sfxn,
406  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
407  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
408 
409  virtual
410  void
411  resolve_trie_vs_trie(
412  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
413  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
414  etable::AnalyticEtableEvaluator const & sfxn,
415  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
416  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
417  virtual
418  void
419  resolve_trie_vs_trie(
420  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
421  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
422  etable::AnalyticEtableEvaluator const & sfxn,
423  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
424  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
425 
426 
427  virtual
428  void
429  resolve_trie_vs_trie(
430  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
431  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
432  etable::AnalyticEtableEvaluator const & sfxn,
433  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
434  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
435 
436  virtual
437  void
438  resolve_trie_vs_trie(
439  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
440  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
441  etable::AnalyticEtableEvaluator const & sfxn,
442  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
443  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
444 
445  virtual
446  void
447  resolve_trie_vs_trie(
448  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
449  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
450  etable::AnalyticEtableEvaluator const & sfxn,
451  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
452  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
453 
454  virtual
455  void
456  resolve_trie_vs_trie(
457  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
458  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
459  etable::AnalyticEtableEvaluator const & sfxn,
460  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
461  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
462 
463  virtual
464  void
465  resolve_trie_vs_trie(
466  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
467  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
468  etable::AnalyticEtableEvaluator const & sfxn,
469  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
470  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
471 
472  virtual
473  void
474  resolve_trie_vs_trie(
475  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
476  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
477  etable::AnalyticEtableEvaluator const & sfxn,
478  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
479  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
480 
481  virtual
482  void
483  resolve_trie_vs_trie(
484  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
485  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
486  etable::AnalyticEtableEvaluator const & sfxn,
487  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
488  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
489 
490  virtual
491  void
492  resolve_trie_vs_trie(
493  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
494  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
495  etable::AnalyticEtableEvaluator const & sfxn,
496  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
497  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
498 
499  virtual
500  void
501  resolve_trie_vs_path(
502  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
503  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
504  etable::AnalyticEtableEvaluator const & sfxn,
505  utility::vector1< core::PackerEnergy > & pair_energy_vector,
506  utility::vector1< core::PackerEnergy > & temp_vector);
507 
508  virtual
509  void
510  resolve_trie_vs_path(
511  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
512  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
513  etable::AnalyticEtableEvaluator const & sfxn,
514  utility::vector1< core::PackerEnergy > & pair_energy_vector,
515  utility::vector1< core::PackerEnergy > & temp_vector);
516 
517  virtual
518  void
519  resolve_trie_vs_path(
520  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
521  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
522  etable::AnalyticEtableEvaluator const & sfxn,
523  utility::vector1< core::PackerEnergy > & pair_energy_vector,
524  utility::vector1< core::PackerEnergy > & temp_vector);
525 
526  virtual
527  void
528  resolve_trie_vs_path(
529  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
530  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
531  etable::AnalyticEtableEvaluator const & sfxn,
532  utility::vector1< core::PackerEnergy > & pair_energy_vector,
533  utility::vector1< core::PackerEnergy > & temp_vector);
534 
535  virtual
536  void
537  resolve_trie_vs_path(
538  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
539  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
540  etable::AnalyticEtableEvaluator const & sfxn,
541  utility::vector1< core::PackerEnergy > & pair_energy_vector,
542  utility::vector1< core::PackerEnergy > & temp_vector);
543 
544  virtual
545  void
546  resolve_trie_vs_path(
547  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
548  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
549  etable::AnalyticEtableEvaluator const & sfxn,
550  utility::vector1< core::PackerEnergy > & pair_energy_vector,
551  utility::vector1< core::PackerEnergy > & temp_vector);
552 
553  virtual
554  void
555  resolve_trie_vs_path(
556  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
557  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
558  etable::AnalyticEtableEvaluator const & sfxn,
559  utility::vector1< core::PackerEnergy > & pair_energy_vector,
560  utility::vector1< core::PackerEnergy > & temp_vector);
561 
562  virtual
563  void
564  resolve_trie_vs_path(
565  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
566  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
567  etable::AnalyticEtableEvaluator const & sfxn,
568  utility::vector1< core::PackerEnergy > & pair_energy_vector,
569  utility::vector1< core::PackerEnergy > & temp_vector);
570 
571  virtual
572  void
573  resolve_trie_vs_path(
574  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
575  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
576  etable::AnalyticEtableEvaluator const & sfxn,
577  utility::vector1< core::PackerEnergy > & pair_energy_vector,
578  utility::vector1< core::PackerEnergy > & temp_vector);
579 
580  virtual
581  void
582  resolve_trie_vs_path(
583  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
584  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
585  etable::AnalyticEtableEvaluator const & sfxn,
586  utility::vector1< core::PackerEnergy > & pair_energy_vector,
587  utility::vector1< core::PackerEnergy > & temp_vector);
588 
589  virtual
590  void
591  resolve_trie_vs_path(
592  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
593  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
594  etable::AnalyticEtableEvaluator const & sfxn,
595  utility::vector1< core::PackerEnergy > & pair_energy_vector,
596  utility::vector1< core::PackerEnergy > & temp_vector);
597 
598  virtual
599  void
600  resolve_trie_vs_path(
601  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
602  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
603  etable::AnalyticEtableEvaluator const & sfxn,
604  utility::vector1< core::PackerEnergy > & pair_energy_vector,
605  utility::vector1< core::PackerEnergy > & temp_vector);
606 
607  virtual
608  void
609  resolve_trie_vs_path(
610  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
611  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
612  etable::AnalyticEtableEvaluator const & sfxn,
613  utility::vector1< core::PackerEnergy > & pair_energy_vector,
614  utility::vector1< core::PackerEnergy > & temp_vector);
615 
616  virtual
617  void
618  resolve_trie_vs_path(
619  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
620  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
621  etable::AnalyticEtableEvaluator const & sfxn,
622  utility::vector1< core::PackerEnergy > & pair_energy_vector,
623  utility::vector1< core::PackerEnergy > & temp_vector);
624 
625  virtual
626  void
627  resolve_trie_vs_path(
628  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
629  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
630  etable::AnalyticEtableEvaluator const & sfxn,
631  utility::vector1< core::PackerEnergy > & pair_energy_vector,
632  utility::vector1< core::PackerEnergy > & temp_vector);
633 
634  virtual
635  void
636  resolve_trie_vs_path(
637  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
638  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
639  etable::AnalyticEtableEvaluator const & sfxn,
640  utility::vector1< core::PackerEnergy > & pair_energy_vector,
641  utility::vector1< core::PackerEnergy > & temp_vector);
642 
643 
644  //////////////////// HBONDS ////////////////////////////
645  virtual
646  void
647  resolve_trie_vs_trie(
648  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
649  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
650  hbonds::HBondEnergy const & sfxn,
651  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
652  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
653 
654 
655  virtual
656  void
657  resolve_trie_vs_path(
658  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
659  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
660  hbonds::HBondEnergy const & sfxn,
661  utility::vector1< core::PackerEnergy > & pair_energy_vector,
662  utility::vector1< core::PackerEnergy > & temp_vector);
663 
664 /// Hack Elec Energy
665 
666  virtual
667  void
668  resolve_trie_vs_trie(
669  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
670  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
671  hackelec::HackElecEnergy const & sfxn,
672  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
673  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
674 
675  virtual
676  void
677  resolve_trie_vs_trie(
678  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
679  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
680  hackelec::HackElecEnergy const & sfxn,
681  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
682  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
683 
684  virtual
685  void
686  resolve_trie_vs_trie(
687  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
688  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
689  hackelec::HackElecEnergy const & sfxn,
690  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
691  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
692 
693  virtual
694  void
695  resolve_trie_vs_trie(
696  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
697  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
698  hackelec::HackElecEnergy const & sfxn,
699  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
700  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
701 
702  virtual
703  void
704  resolve_trie_vs_trie(
705  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
706  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
707  hackelec::HackElecEnergy const & sfxn,
708  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
709  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
710 
711  virtual
712  void
713  resolve_trie_vs_trie(
714  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
715  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
716  hackelec::HackElecEnergy const & sfxn,
717  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
718  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
719 
720  virtual
721  void
722  resolve_trie_vs_trie(
723  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
724  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
725  hackelec::HackElecEnergy const & sfxn,
726  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
727  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
728 
729  virtual
730  void
731  resolve_trie_vs_trie(
732  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
733  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
734  hackelec::HackElecEnergy const & sfxn,
735  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
736  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
737 
738  virtual
739  void
740  resolve_trie_vs_trie(
741  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
742  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
743  hackelec::HackElecEnergy const & sfxn,
744  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
745  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
746 
747  virtual
748  void
749  resolve_trie_vs_trie(
750  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
751  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
752  hackelec::HackElecEnergy const & sfxn,
753  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
754  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
755 
756  virtual
757  void
758  resolve_trie_vs_trie(
759  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
760  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
761  hackelec::HackElecEnergy const & sfxn,
762  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
763  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
764  virtual
765  void
766  resolve_trie_vs_trie(
767  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
768  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
769  hackelec::HackElecEnergy const & sfxn,
770  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
771  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
772 
773  virtual
774  void
775  resolve_trie_vs_trie(
776  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
777  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
778  hackelec::HackElecEnergy const & sfxn,
779  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
780  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
781 
782  virtual
783  void
784  resolve_trie_vs_trie(
785  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
786  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
787  hackelec::HackElecEnergy const & sfxn,
788  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
789  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
790 
791  virtual
792  void
793  resolve_trie_vs_trie(
794  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
795  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
796  hackelec::HackElecEnergy const & sfxn,
797  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
798  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
799 
800  virtual
801  void
802  resolve_trie_vs_trie(
803  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
804  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
805  hackelec::HackElecEnergy const & sfxn,
806  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
807  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
808 
809  virtual
810  void
811  resolve_trie_vs_path(
812  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
813  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
814  hackelec::HackElecEnergy const & sfxn,
815  utility::vector1< core::PackerEnergy > & pair_energy_vector,
816  utility::vector1< core::PackerEnergy > & temp_vector);
817 
818  virtual
819  void
820  resolve_trie_vs_path(
821  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
822  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
823  hackelec::HackElecEnergy const & sfxn,
824  utility::vector1< core::PackerEnergy > & pair_energy_vector,
825  utility::vector1< core::PackerEnergy > & temp_vector);
826 
827  virtual
828  void
829  resolve_trie_vs_path(
830  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
831  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
832  hackelec::HackElecEnergy const & sfxn,
833  utility::vector1< core::PackerEnergy > & pair_energy_vector,
834  utility::vector1< core::PackerEnergy > & temp_vector);
835 
836  virtual
837  void
838  resolve_trie_vs_path(
839  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
840  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
841  hackelec::HackElecEnergy const & sfxn,
842  utility::vector1< core::PackerEnergy > & pair_energy_vector,
843  utility::vector1< core::PackerEnergy > & temp_vector);
844 
845  virtual
846  void
847  resolve_trie_vs_path(
848  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
849  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
850  hackelec::HackElecEnergy const & sfxn,
851  utility::vector1< core::PackerEnergy > & pair_energy_vector,
852  utility::vector1< core::PackerEnergy > & temp_vector);
853 
854  virtual
855  void
856  resolve_trie_vs_path(
857  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
858  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
859  hackelec::HackElecEnergy const & sfxn,
860  utility::vector1< core::PackerEnergy > & pair_energy_vector,
861  utility::vector1< core::PackerEnergy > & temp_vector);
862 
863  virtual
864  void
865  resolve_trie_vs_path(
866  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
867  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
868  hackelec::HackElecEnergy const & sfxn,
869  utility::vector1< core::PackerEnergy > & pair_energy_vector,
870  utility::vector1< core::PackerEnergy > & temp_vector);
871 
872  virtual
873  void
874  resolve_trie_vs_path(
875  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
876  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
877  hackelec::HackElecEnergy const & sfxn,
878  utility::vector1< core::PackerEnergy > & pair_energy_vector,
879  utility::vector1< core::PackerEnergy > & temp_vector);
880 
881  virtual
882  void
883  resolve_trie_vs_path(
884  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
885  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
886  hackelec::HackElecEnergy const & sfxn,
887  utility::vector1< core::PackerEnergy > & pair_energy_vector,
888  utility::vector1< core::PackerEnergy > & temp_vector);
889 
890  virtual
891  void
892  resolve_trie_vs_path(
893  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
894  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
895  hackelec::HackElecEnergy const & sfxn,
896  utility::vector1< core::PackerEnergy > & pair_energy_vector,
897  utility::vector1< core::PackerEnergy > & temp_vector);
898 
899  virtual
900  void
901  resolve_trie_vs_path(
902  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
903  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
904  hackelec::HackElecEnergy const & sfxn,
905  utility::vector1< core::PackerEnergy > & pair_energy_vector,
906  utility::vector1< core::PackerEnergy > & temp_vector);
907 
908  virtual
909  void
910  resolve_trie_vs_path(
911  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
912  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
913  hackelec::HackElecEnergy const & sfxn,
914  utility::vector1< core::PackerEnergy > & pair_energy_vector,
915  utility::vector1< core::PackerEnergy > & temp_vector);
916 
917  virtual
918  void
919  resolve_trie_vs_path(
920  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
921  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
922  hackelec::HackElecEnergy const & sfxn,
923  utility::vector1< core::PackerEnergy > & pair_energy_vector,
924  utility::vector1< core::PackerEnergy > & temp_vector);
925 
926  virtual
927  void
928  resolve_trie_vs_path(
929  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
930  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
931  hackelec::HackElecEnergy const & sfxn,
932  utility::vector1< core::PackerEnergy > & pair_energy_vector,
933  utility::vector1< core::PackerEnergy > & temp_vector);
934 
935  virtual
936  void
937  resolve_trie_vs_path(
938  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
939  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
940  hackelec::HackElecEnergy const & sfxn,
941  utility::vector1< core::PackerEnergy > & pair_energy_vector,
942  utility::vector1< core::PackerEnergy > & temp_vector);
943 
944  virtual
945  void
946  resolve_trie_vs_path(
947  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
948  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
949  hackelec::HackElecEnergy const & sfxn,
950  utility::vector1< core::PackerEnergy > & pair_energy_vector,
951  utility::vector1< core::PackerEnergy > & temp_vector);
952 
953 
954  /////////////////////////// MMLJEnergyInter //////////////////////////////
955  virtual
956  void
957  resolve_trie_vs_trie(
958  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
959  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
960  methods::MMLJEnergyInter const & sfxn,
961  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
962  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
963 
964  virtual
965  void
966  resolve_trie_vs_trie(
967  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
968  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
969  methods::MMLJEnergyInter const & sfxn,
970  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
971  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
972 
973  virtual
974  void
975  resolve_trie_vs_trie(
976  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
977  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
978  methods::MMLJEnergyInter const & sfxn,
979  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
980  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
981 
982  virtual
983  void
984  resolve_trie_vs_trie(
985  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
986  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
987  methods::MMLJEnergyInter const & sfxn,
988  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
989  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
990 
991  virtual
992  void
993  resolve_trie_vs_trie(
994  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
995  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
996  methods::MMLJEnergyInter const & sfxn,
997  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
998  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
999 
1000  virtual
1001  void
1002  resolve_trie_vs_trie(
1003  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1004  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1005  methods::MMLJEnergyInter const & sfxn,
1006  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1007  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1008 
1009  virtual
1010  void
1011  resolve_trie_vs_trie(
1012  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1013  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1014  methods::MMLJEnergyInter const & sfxn,
1015  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1016  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1017 
1018  virtual
1019  void
1020  resolve_trie_vs_trie(
1021  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1022  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1023  methods::MMLJEnergyInter const & sfxn,
1024  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1025  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1026 
1027  virtual
1028  void
1029  resolve_trie_vs_trie(
1030  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1031  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1032  methods::MMLJEnergyInter const & sfxn,
1033  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1034  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1035 
1036  virtual
1037  void
1038  resolve_trie_vs_trie(
1039  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1040  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1041  methods::MMLJEnergyInter const & sfxn,
1042  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1043  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1044 
1045  virtual
1046  void
1047  resolve_trie_vs_trie(
1048  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1049  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1050  methods::MMLJEnergyInter const & sfxn,
1051  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1052  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1053 
1054  virtual
1055  void
1056  resolve_trie_vs_trie(
1057  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1058  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1059  methods::MMLJEnergyInter const & sfxn,
1060  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1061  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1062 
1063  virtual
1064  void
1065  resolve_trie_vs_trie(
1066  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1067  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1068  methods::MMLJEnergyInter const & sfxn,
1069  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1070  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1071 
1072  virtual
1073  void
1074  resolve_trie_vs_trie(
1075  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1076  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1077  methods::MMLJEnergyInter const & sfxn,
1078  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1079  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1080 
1081  virtual
1082  void
1083  resolve_trie_vs_trie(
1084  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1085  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1086  methods::MMLJEnergyInter const & sfxn,
1087  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1088  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1089 
1090  virtual
1091  void
1092  resolve_trie_vs_trie(
1093  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1094  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1095  methods::MMLJEnergyInter const & sfxn,
1096  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1097  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1098 
1099  virtual
1100  void
1101  resolve_trie_vs_path(
1102  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1103  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1104  methods::MMLJEnergyInter const & sfxn,
1105  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1106  utility::vector1< core::PackerEnergy > & temp_vector);
1107 
1108  virtual
1109  void
1110  resolve_trie_vs_path(
1111  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1112  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1113  methods::MMLJEnergyInter const & sfxn,
1114  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1115  utility::vector1< core::PackerEnergy > & temp_vector);
1116 
1117  virtual
1118  void
1119  resolve_trie_vs_path(
1120  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1121  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1122  methods::MMLJEnergyInter const & sfxn,
1123  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1124  utility::vector1< core::PackerEnergy > & temp_vector);
1125 
1126  virtual
1127  void
1128  resolve_trie_vs_path(
1129  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1130  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1131  methods::MMLJEnergyInter const & sfxn,
1132  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1133  utility::vector1< core::PackerEnergy > & temp_vector);
1134 
1135  virtual
1136  void
1137  resolve_trie_vs_path(
1138  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1139  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1140  methods::MMLJEnergyInter const & sfxn,
1141  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1142  utility::vector1< core::PackerEnergy > & temp_vector);
1143 
1144  virtual
1145  void
1146  resolve_trie_vs_path(
1147  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1148  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1149  methods::MMLJEnergyInter const & sfxn,
1150  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1151  utility::vector1< core::PackerEnergy > & temp_vector);
1152 
1153  virtual
1154  void
1155  resolve_trie_vs_path(
1156  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1157  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1158  methods::MMLJEnergyInter const & sfxn,
1159  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1160  utility::vector1< core::PackerEnergy > & temp_vector);
1161 
1162  virtual
1163  void
1164  resolve_trie_vs_path(
1165  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1166  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1167  methods::MMLJEnergyInter const & sfxn,
1168  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1169  utility::vector1< core::PackerEnergy > & temp_vector);
1170 
1171  virtual
1172  void
1173  resolve_trie_vs_path(
1174  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1175  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1176  methods::MMLJEnergyInter const & sfxn,
1177  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1178  utility::vector1< core::PackerEnergy > & temp_vector);
1179 
1180  virtual
1181  void
1182  resolve_trie_vs_path(
1183  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1184  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1185  methods::MMLJEnergyInter const & sfxn,
1186  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1187  utility::vector1< core::PackerEnergy > & temp_vector);
1188 
1189  virtual
1190  void
1191  resolve_trie_vs_path(
1192  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1193  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1194  methods::MMLJEnergyInter const & sfxn,
1195  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1196  utility::vector1< core::PackerEnergy > & temp_vector);
1197 
1198  virtual
1199  void
1200  resolve_trie_vs_path(
1201  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1202  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1203  methods::MMLJEnergyInter const & sfxn,
1204  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1205  utility::vector1< core::PackerEnergy > & temp_vector);
1206 
1207  virtual
1208  void
1209  resolve_trie_vs_path(
1210  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1211  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1212  methods::MMLJEnergyInter const & sfxn,
1213  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1214  utility::vector1< core::PackerEnergy > & temp_vector);
1215 
1216  virtual
1217  void
1218  resolve_trie_vs_path(
1219  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1220  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1221  methods::MMLJEnergyInter const & sfxn,
1222  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1223  utility::vector1< core::PackerEnergy > & temp_vector);
1224 
1225  virtual
1226  void
1227  resolve_trie_vs_path(
1228  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1229  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1230  methods::MMLJEnergyInter const & sfxn,
1231  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1232  utility::vector1< core::PackerEnergy > & temp_vector);
1233 
1234  virtual
1235  void
1236  resolve_trie_vs_path(
1237  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1238  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1239  methods::MMLJEnergyInter const & sfxn,
1240  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1241  utility::vector1< core::PackerEnergy > & temp_vector);
1242 
1243 };
1244 
1245 
1246 } // namespace etrie
1247 } // namespace etable
1248 } // namespace scoring
1249 } // namespace core
1250 
1251 #endif
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