a fragment candidate More...

#include <ProfileScore.hh>

Inheritance diagram for protocols::frag_picker::scores::ProfileScore:

Collaboration diagram for protocols::frag_picker::scores::ProfileScore:

Public Member Functions
	ProfileScore (Size priority, Real lowest_acceptable_value, bool use_lowest, sequence::SequenceProfileOP query_profile, sequence::ScoringSchemeOP profile_scoring, Size longest_vall_chunk)

	~ProfileScore ()

void	do_caching (VallChunkOP)

void	clean_up ()

bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)

bool	describe_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map, std::ostream &out)

Public Member Functions inherited from protocols::frag_picker::scores::CachingScoringMethod
	CachingScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)

virtual bool	score (FragmentCandidateOP fragment, FragmentScoreMapOP scores)

Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
	FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)

std::string &	get_score_name ()
	Returns a name of this scoring method. More...

Size	get_id ()
	Returns an integer index assigned to this scoring method by a scoring manager. More...

void	set_id (Size id)
	Sets a new integer index for this scoring method. More...

Size	get_priority ()
	Returns a priority of this scoring method. More...

Real	get_min_allowed_score ()
	Returns the lowest acceptable score value for this scoring method. More...

bool	get_use_lowest ()
	Returns the boolean choice on using the above lowest acceptable score value. More...

void	set_min_allowed_score (Real lowest_acceptable_value)
	Sets a new value of the lowest acceptable score. More...

Protected Attributes
Matrix	scores_

Private Member Functions
void	clear ()

Private Attributes
sequence::SequenceProfileOP	query_profile_

sequence::ScoringSchemeOP	profile_scoring_

std::string	cached_scores_id_

Detailed Description

a fragment candidate

Definition at line 39 of file ProfileScore.hh.

Constructor & Destructor Documentation

protocols::frag_picker::scores::ProfileScore::ProfileScore	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest,
		sequence::SequenceProfileOP	query_profile,
		sequence::ScoringSchemeOP	profile_scoring,
		Size	longest_vall_chunk
	)